Detailed information NTG1030620

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: BQ8897_RS00420
• Genome accession: NZ_LT714196
• Coordinates: 65860..66858 (+)
• Length: 332 a.a.
• NCBI ID: WP_001873969.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae isolate BM110
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 60860..71858

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BQ8897_RS00400 (BQ8897_BM110_00071)	-	60962..62206 (+)	1245	WP_000522367.1	DUF4041 domain-containing protein	-
BQ8897_RS00405 (BQ8897_BM110_00072)	-	62338..63183 (+)	846	WP_000613836.1	hypothetical protein	-
BQ8897_RS00410 (BQ8897_BM110_00073)	purB	63201..64499 (+)	1299	WP_000625675.1	adenylosuccinate lyase	-
BQ8897_RS00415 (BQ8897_BM110_00074)	comR	64652..65563 (+)	912	WP_000912100.1	helix-turn-helix domain-containing protein	Regulator
BQ8897_RS00420 (BQ8897_BM110_00075)	ruvB	65860..66858 (+)	999	WP_001873969.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
BQ8897_RS00425 (BQ8897_BM110_00076)	-	67010..67447 (+)	438	WP_000754819.1	low molecular weight protein-tyrosine-phosphatase	-
BQ8897_RS00430 (BQ8897_BM110_00077)	-	67454..67834 (+)	381	WP_000787702.1	membrane protein	-
BQ8897_RS00435 (BQ8897_BM110_00078)	-	67831..69609 (+)	1779	WP_001220913.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37603.92 Da
• Isoelectric Point: 4.5053

>NTDB_id=1030620 BQ8897_RS00420 WP_001873969.1 65860..66858(+) (ruvB) [Streptococcus agalactiae isolate BM110]
MTRFLDSDAMGDEELVERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEMKITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DNITDKALTMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNITEERDTVEDMYEPYLIQKGFIMRTRTGRVATDK
AYEHLGYQRFDK

Nucleotide

• Length: 999 bp

>NTDB_id=1030620 BQ8897_RS00420 WP_001873969.1 65860..66858(+) (ruvB) [Streptococcus agalactiae isolate BM110]
ATGACAAGATTTTTAGATAGTGATGCAATGGGTGACGAAGAATTGGTAGAACGTACACTTCGTCCGCAGTATTTAAGAGA
GTATATTGGACAAGATAAGGTTAAAGATCAGCTAAAAATATTTATTGAAGCTGCTAAATTGCGTGATGAGTCATTGGATC
ATGTGTTATTATTTGGCCCTCCTGGTTTAGGGAAAACAACCATGGCATTTGTAATTGCTAATGAGTTGGGTGTCAATCTC
AAACAAACATCAGGTCCCGCAATTGAAAAATCAGGGGATTTAGTAGCCATTTTAAATGATTTAGAACCAGGTGATGTTCT
TTTTATTGATGAAATTCATCGTATGCCGATGGCGGTTGAAGAGGTACTTTATAGTGCAATGGAAGACTTCTATATTGACA
TTATGATCGGTGCAGGAGAAACTAGTAGAAGTGTTCATTTAGATTTGCCGCCCTTTACCTTAATTGGTGCAACGACACGT
GCAGGTATGTTATCTAATCCCTTACGTGCTCGCTTTGGTATTACAGGGCATATGGAGTATTATGAAGAAAACGATTTGAC
AGAAATTATTGAGCGTACAGCAGATATTTTTGAAATGAAAATTACTTATGAAGCTGCTTCTGAATTAGCGCGTCGCAGTC
GTGGAACGCCACGTATCGCTAACCGTTTATTGAAACGTGTTCGAGATTATGCTCAAATCATGGGAGATGGTTTGATAGAT
GACAATATTACAGATAAAGCATTAACGATGTTAGATGTTGATCACGAGGGGCTTGATTACGTCGATCAAAAAATCTTAAG
AACCATGATTGAAATGTATAATGGAGGTCCTGTTGGTTTAGGAACTCTATCCGTTAATATTACTGAAGAACGAGATACTG
TTGAAGACATGTACGAACCTTATTTAATTCAAAAAGGTTTTATTATGCGTACCCGTACCGGTCGTGTAGCTACGGATAAG
GCATACGAACATTTAGGTTATCAGCGATTTGATAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.759	100	0.898
ruvB	Streptococcus pneumoniae R6	89.458	100	0.895
ruvB	Streptococcus pneumoniae D39	89.458	100	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.819	99.699	0.596
ruvB	Helicobacter pylori 26695	53.074	93.072	0.494
ruvB	Synechocystis sp. PCC 6803	50.479	94.277	0.476