Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB6W67_RS04010 Genome accession   NZ_CP163516
Coordinates   845202..845738 (+) Length   178 a.a.
NCBI ID   WP_000168309.1    Uniprot ID   A0A9X0PYU7
Organism   Escherichia coli isolate FELIX_MS516     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 840202..850738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6W67_RS03990 (AB6W67_03990) aphA 840491..841204 (+) 714 WP_001226928.1 acid phosphatase AphA -
  AB6W67_RS03995 (AB6W67_03995) yjbQ 841315..841731 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AB6W67_RS04000 (AB6W67_04000) yjbR 841735..842091 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  AB6W67_RS04005 (AB6W67_04005) uvrA 842126..844948 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  AB6W67_RS04010 (AB6W67_04010) ssb 845202..845738 (+) 537 WP_000168309.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AB6W67_RS04015 (AB6W67_04015) yjcB 845837..846118 (-) 282 WP_001295689.1 YjcB family protein -
  AB6W67_RS04020 (AB6W67_04020) pdeC 846548..848134 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  AB6W67_RS04025 (AB6W67_04025) soxS 848137..848460 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  AB6W67_RS04030 (AB6W67_04030) soxR 848546..849010 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18960.97 Da        Isoelectric Point: 5.2358

>NTDB_id=1030418 AB6W67_RS04010 WP_000168309.1 845202..845738(+) (ssb) [Escherichia coli isolate FELIX_MS516]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNVGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1030418 AB6W67_RS04010 WP_000168309.1 845202..845738(+) (ssb) [Escherichia coli isolate FELIX_MS516]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATGTCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment