Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB6N04_RS19075 Genome accession   NZ_CP163512
Coordinates   4179200..4179718 (+) Length   172 a.a.
NCBI ID   WP_369309793.1    Uniprot ID   -
Organism   Providencia rettgeri strain 119     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4174200..4184718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6N04_RS19065 (AB6N04_19065) - 4174643..4175839 (+) 1197 WP_369309791.1 aromatic amino acid transaminase -
  AB6N04_RS19070 (AB6N04_19070) uvrA 4175903..4178737 (-) 2835 WP_369309792.1 excinuclease ABC subunit UvrA -
  AB6N04_RS19075 (AB6N04_19075) ssb 4179200..4179718 (+) 519 WP_369309793.1 single-stranded DNA-binding protein Machinery gene
  AB6N04_RS19080 (AB6N04_19080) - 4180665..4180853 (+) 189 WP_369309794.1 DUF4762 family protein -
  AB6N04_RS19085 (AB6N04_19085) - 4180934..4181611 (+) 678 WP_369309795.1 DsbA family protein -
  AB6N04_RS19090 (AB6N04_19090) - 4181614..4182570 (+) 957 WP_369309796.1 ABC transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18485.46 Da        Isoelectric Point: 4.9468

>NTDB_id=1030274 AB6N04_RS19075 WP_369309793.1 4179200..4179718(+) (ssb) [Providencia rettgeri strain 119]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDASSQGQGGQGGWGQPQQPQAAQQFSGGGAPARSQAAAPQTN
EPPMDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1030274 AB6N04_RS19075 WP_369309793.1 4179200..4179718(+) (ssb) [Providencia rettgeri strain 119]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCTGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGCGACAAGCAAACTGGCGAGATGCGTGAAAAAACAG
AATGGCATCGCGTGGTGATTTTCGGCAAATTAGCTGAAGTTGCGGGTGAATATCTGAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACGCGTAAATGGCAAGACCAAAGCGGTCAAGATCGTTACACAACTGAAGTGGTTGTTAATATTGG
CGGCTCTATGCAAATGTTGGGTGGTCGTGGTGGCGATGCGTCATCACAAGGCCAGGGTGGTCAAGGTGGTTGGGGTCAAC
CTCAACAACCACAAGCCGCACAACAATTCAGTGGCGGCGGAGCCCCAGCTCGCTCACAAGCGGCTGCCCCGCAAACCAAT
GAACCACCAATGGATTTCGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.067

100

0.75
  ssb Glaesserella parasuis strain SC1401

58.065

100

0.628
  ssb Neisseria meningitidis MC58

46.629

100

0.483
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.483

Multiple sequence alignment