Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB6N02_RS05465 | Genome accession | NZ_CP163510 |
| Coordinates | 1109754..1110323 (-) | Length | 189 a.a. |
| NCBI ID | WP_010674212.1 | Uniprot ID | A0A081LN46 |
| Organism | Aeromonas caviae strain 103 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1077080..1109593 | 1109754..1110323 | flank | 161 |
Gene organization within MGE regions
Location: 1077080..1110323
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB6N02_RS05300 (AB6N02_05300) | - | 1077080..1078108 (-) | 1029 | WP_369325424.1 | IS630-like element ISAhy2 family transposase | - |
| AB6N02_RS05305 (AB6N02_05305) | - | 1078214..1078465 (-) | 252 | WP_127904518.1 | hypothetical protein | - |
| AB6N02_RS05310 (AB6N02_05310) | - | 1078676..1079119 (+) | 444 | WP_053288953.1 | antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein | - |
| AB6N02_RS05315 (AB6N02_05315) | - | 1079913..1080227 (+) | 315 | WP_039026396.1 | transposase | - |
| AB6N02_RS05320 (AB6N02_05320) | - | 1080263..1081045 (+) | 783 | WP_223936907.1 | IS3 family transposase | - |
| AB6N02_RS05325 (AB6N02_05325) | - | 1081690..1082871 (+) | 1182 | WP_158657420.1 | cupin domain-containing protein | - |
| AB6N02_RS05330 (AB6N02_05330) | - | 1082890..1083702 (+) | 813 | WP_053288697.1 | TylF/MycF/NovP-related O-methyltransferase | - |
| AB6N02_RS05335 (AB6N02_05335) | - | 1083690..1084910 (+) | 1221 | WP_069785450.1 | MFS transporter | - |
| AB6N02_RS05340 (AB6N02_05340) | - | 1085055..1085837 (-) | 783 | WP_124812705.1 | hypothetical protein | - |
| AB6N02_RS05345 (AB6N02_05345) | - | 1086385..1087689 (+) | 1305 | WP_223920587.1 | UvrD-helicase domain-containing protein | - |
| AB6N02_RS05350 (AB6N02_05350) | - | 1087760..1089028 (+) | 1269 | WP_041205731.1 | IS4-like element ISAeme3 family transposase | - |
| AB6N02_RS05355 (AB6N02_05355) | - | 1089124..1089294 (+) | 171 | WP_200164220.1 | hypothetical protein | - |
| AB6N02_RS05360 (AB6N02_05360) | - | 1089294..1090010 (+) | 717 | WP_200164221.1 | M48 family metallopeptidase | - |
| AB6N02_RS05365 (AB6N02_05365) | - | 1090072..1090565 (-) | 494 | Protein_1014 | IS5 family transposase | - |
| AB6N02_RS05370 (AB6N02_05370) | - | 1090666..1091082 (-) | 417 | WP_202041879.1 | type II toxin-antitoxin system HigA family antitoxin | - |
| AB6N02_RS05375 (AB6N02_05375) | - | 1091373..1091624 (+) | 252 | WP_134996526.1 | plasmid stabilization protein | - |
| AB6N02_RS05380 (AB6N02_05380) | istA | 1091880..1093421 (+) | 1542 | WP_010673729.1 | IS21-like element ISAs29 family transposase | - |
| AB6N02_RS05385 (AB6N02_05385) | istB | 1093436..1094191 (+) | 756 | WP_000194037.1 | IS21-like element ISAs29 family helper ATPase IstB | - |
| AB6N02_RS05390 (AB6N02_05390) | istB | 1094272..1094538 (+) | 267 | Protein_1019 | IS21-like element ISAs29 family helper ATPase IstB | - |
| AB6N02_RS05395 (AB6N02_05395) | - | 1095934..1097208 (+) | 1275 | WP_011191341.1 | IS4-like element ISApu2 family transposase | - |
| AB6N02_RS05400 (AB6N02_05400) | - | 1097304..1097507 (+) | 204 | WP_369325504.1 | antitoxin Xre-like helix-turn-helix domain-containing protein | - |
| AB6N02_RS05405 (AB6N02_05405) | - | 1097609..1098640 (+) | 1032 | WP_001809438.1 | IS630-like element ISAhy2 family transposase | - |
| AB6N02_RS05410 (AB6N02_05410) | - | 1098725..1098859 (+) | 135 | WP_268844002.1 | antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein | - |
| AB6N02_RS05415 (AB6N02_05415) | - | 1098919..1100811 (-) | 1893 | WP_369325425.1 | AAA family ATPase | - |
| AB6N02_RS05420 (AB6N02_05420) | - | 1100882..1102303 (-) | 1422 | WP_032495448.1 | IS66-like element ISKpn15 family transposase | - |
| AB6N02_RS05425 (AB6N02_05425) | - | 1102701..1103207 (-) | 507 | WP_134997595.1 | hypothetical protein | - |
| AB6N02_RS05430 (AB6N02_05430) | - | 1103204..1103623 (-) | 420 | WP_134997596.1 | hypothetical protein | - |
| AB6N02_RS05435 (AB6N02_05435) | - | 1103620..1105683 (-) | 2064 | WP_223930587.1 | integrase | - |
| AB6N02_RS05440 (AB6N02_05440) | - | 1105680..1106924 (-) | 1245 | WP_369325426.1 | tyrosine-type recombinase/integrase | - |
| AB6N02_RS05445 (AB6N02_05445) | - | 1106908..1107729 (-) | 822 | WP_039026397.1 | IS3 family transposase | - |
| AB6N02_RS05450 (AB6N02_05450) | - | 1107726..1108040 (-) | 315 | WP_039026396.1 | transposase | - |
| AB6N02_RS05455 (AB6N02_05455) | - | 1108037..1108378 (-) | 342 | WP_369325427.1 | hypothetical protein | - |
| AB6N02_RS05460 (AB6N02_05460) | - | 1108400..1109593 (-) | 1194 | WP_200163880.1 | site-specific integrase | - |
| AB6N02_RS05465 (AB6N02_05465) | ssb | 1109754..1110323 (-) | 570 | WP_010674212.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 189 a.a. Molecular weight: 20813.18 Da Isoelectric Point: 5.9247
>NTDB_id=1030219 AB6N02_RS05465 WP_010674212.1 1109754..1110323(-) (ssb) [Aeromonas caviae strain 103]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGGQGMGGQSSQGNWGQPQQAAPQQNMQRPAAPQQNMQPQG
GYGRPAQQPQSAPPVYNEPPMDFDDDIPF
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGGQGMGGQSSQGNWGQPQQAAPQQNMQRPAAPQQNMQPQG
GYGRPAQQPQSAPPVYNEPPMDFDDDIPF
Nucleotide
Download Length: 570 bp
>NTDB_id=1030219 AB6N02_RS05465 WP_010674212.1 1109754..1110323(-) (ssb) [Aeromonas caviae strain 103]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGATACTTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTCCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACCGAGGTGCTGGTCGACAGCTT
CACCGGTGTGATGCAGATGCTGGGTGGCCGTCCGCAGGGCGGTGGCCAGGGCATGGGCGGCCAGTCATCCCAGGGCAACT
GGGGCCAGCCGCAACAGGCTGCACCGCAACAGAACATGCAACGTCCTGCTGCCCCGCAGCAGAACATGCAACCGCAAGGC
GGTTACGGCCGTCCGGCCCAGCAGCCGCAATCCGCCCCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGACGATAT
TCCGTTCTAG
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGATACTTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTCCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACCGAGGTGCTGGTCGACAGCTT
CACCGGTGTGATGCAGATGCTGGGTGGCCGTCCGCAGGGCGGTGGCCAGGGCATGGGCGGCCAGTCATCCCAGGGCAACT
GGGGCCAGCCGCAACAGGCTGCACCGCAACAGAACATGCAACGTCCTGCTGCCCCGCAGCAGAACATGCAACCGCAAGGC
GGTTACGGCCGTCCGGCCCAGCAGCCGCAATCCGCCCCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGACGATAT
TCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
68.912 |
100 |
0.704 |
| ssb | Glaesserella parasuis strain SC1401 |
54.011 |
98.942 |
0.534 |
| ssb | Neisseria meningitidis MC58 |
47.34 |
99.471 |
0.471 |
| ssb | Neisseria gonorrhoeae MS11 |
46.774 |
98.413 |
0.46 |