Detailed information NTG1030212

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB6N02_RS01025
• Genome accession: NZ_CP163510
• Coordinates: 204072..204947 (+)
• Length: 291 a.a.
• NCBI ID: WP_052814465.1
• Uniprot ID: A0AAW9F3H3
• Organism: Aeromonas caviae strain 103
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 199072..209947

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB6N02_RS01005 (AB6N02_01005)	nadC	199356..200219 (+)	864	WP_052814467.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AB6N02_RS01010 (AB6N02_01010)	-	200380..200919 (+)	540	WP_270825191.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AB6N02_RS01015 (AB6N02_01015)	pilB	200919..202625 (+)	1707	WP_052814466.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
AB6N02_RS01020 (AB6N02_01020)	pilC	202753..203994 (+)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
AB6N02_RS01025 (AB6N02_01025)	pilD	204072..204947 (+)	876	WP_052814465.1	A24 family peptidase	Machinery gene
AB6N02_RS01030 (AB6N02_01030)	coaE	204966..205580 (+)	615	WP_369325401.1	dephospho-CoA kinase	-
AB6N02_RS01035 (AB6N02_01035)	zapD	205618..206340 (+)	723	WP_010675825.1	cell division protein ZapD	-
AB6N02_RS01040 (AB6N02_01040)	yacG	206351..206545 (+)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
AB6N02_RS01045 (AB6N02_01045)	mutT	206603..207007 (-)	405	WP_174213873.1	8-oxo-dGTP diphosphatase MutT	-
AB6N02_RS01050 (AB6N02_01050)	-	207016..208200 (-)	1185	WP_049637195.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32113.21 Da
• Isoelectric Point: 6.8280

>NTDB_id=1030212 AB6N02_RS01025 WP_052814465.1 204072..204947(+) (pilD) [Aeromonas caviae strain 103]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALSPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWTFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLTIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=1030212 AB6N02_RS01025 WP_052814465.1 204072..204947(+) (pilD) [Aeromonas caviae strain 103]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTACCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTACTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTTCCCCCGGCTGGG
GCACCCTTGCCGCTTTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCGGGTTACCTGGTGCTCTGGAGCCTCTACTGGACCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGGT
ACGGGGATTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCACCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.49	98.282	0.595
pilD	Vibrio campbellii strain DS40M4	56.552	99.656	0.564
pilD	Acinetobacter baumannii D1279779	51.613	95.876	0.495
pilD	Acinetobacter nosocomialis M2	51.613	95.876	0.495
pilD	Neisseria gonorrhoeae MS11	51.724	89.691	0.464