Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   YSQ_RS02015 Genome accession   NZ_CP007183
Coordinates   410158..411168 (-) Length   336 a.a.
NCBI ID   WP_002777794.1    Uniprot ID   A0ABP2NSK5
Organism   Campylobacter coli RM1875     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 405158..416168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSQ_RS02000 (YSQ_02025) glmS 405736..407532 (+) 1797 WP_002780511.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  YSQ_RS02005 (YSQ_02030) fumC 407667..409058 (+) 1392 WP_002777799.1 class II fumarate hydratase -
  YSQ_RS02010 (YSQ_02035) - 409105..410148 (-) 1044 WP_002777797.1 AI-2E family transporter -
  YSQ_RS02015 (YSQ_02040) ruvB 410158..411168 (-) 1011 WP_002777794.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  YSQ_RS02020 (YSQ_02045) - 411259..411669 (+) 411 WP_002783915.1 hypothetical protein -
  YSQ_RS02025 (YSQ_02050) - 412235..414514 (+) 2280 WP_002799743.1 autotransporter outer membrane beta-barrel domain-containing protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37570.98 Da        Isoelectric Point: 4.7834

>NTDB_id=103013 YSQ_RS02015 WP_002777794.1 410158..411168(-) (ruvB) [Campylobacter coli RM1875]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQENIKKNLNVFISAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDEELAIILQKAALKLNKSCENEAALEIAKRSRSTPRIALRLLKRVRDFADVNDEETIT
KERAKEALNSLGVNELGFDAMDLRYLELLTEAKRKPIGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKS
FSVLKLNYEQTLFDEN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=103013 YSQ_RS02015 WP_002777794.1 410158..411168(-) (ruvB) [Campylobacter coli RM1875]
ATGGACAGAATAGTAGAAATAGAAAAATATTCTTTTGACGAAACTTATGAAACTTCTCTGCGTCCTTCAAATTTCGATGG
CTACATAGGACAAGAAAACATTAAAAAAAATTTAAATGTTTTTATTAGCGCTGCAAAAAAAAGAAATGAATGCTTAGACC
ATATACTTTTTAGTGGGCCTGCAGGACTTGGCAAAACTACATTAGCTAATATTATTTCTTATGAGATGGGTGCAAATATC
AAAACAACTGCGGCTCCTATGATAGAAAAAAGCGGGGATTTGGCTGCAATTTTAACCAATTTAAGCGAAGGAGATGTGCT
TTTTATCGATGAAATTCATCGCTTAAGCCCTGCTATTGAAGAAGTACTTTACCCTGCAATGGAAGATTATAGGCTAGATA
TCATCATCGGTAGTGGCCCTGCAGCACAAACTATAAAAATCGATTTGCCTAAATTTACACTTATTGGCGCTACAACCCGT
GCAGGAATGCTTAGCAATCCTTTAAGAGATCGTTTTGGAATGCAATTTAGACTTGAATTTTATAAAGATGAAGAGCTTGC
TATCATACTTCAAAAAGCTGCACTAAAGCTCAATAAAAGCTGTGAAAATGAAGCTGCACTTGAGATTGCCAAAAGAAGTC
GCTCTACCCCTAGAATCGCACTTAGACTTTTAAAAAGAGTGAGAGATTTTGCAGATGTAAATGACGAAGAAACGATCACC
AAAGAAAGGGCTAAAGAAGCATTAAATTCTTTAGGTGTCAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTAGA
GCTTTTAACAGAGGCTAAAAGAAAGCCTATAGGACTTTCTAGTATAGCGGCAGCTTTGAGTGAAGATGAAAATACTATTG
AAGATGTAATCGAACCTTATTTGCTTGCAAATGGCTACATAGAACGCACTGCCAAAGGTCGTATAGCAAGTACAAAAAGT
TTTAGTGTACTTAAGCTTAATTACGAACAAACTTTATTTGATGAAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

68.862

99.405

0.685
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.374

97.024

0.518
  ruvB Streptococcus pneumoniae TIGR4

48.338

98.512

0.476
  ruvB Streptococcus pneumoniae R6

48.338

98.512

0.476
  ruvB Streptococcus pneumoniae D39

48.338

98.512

0.476
  ruvB Synechocystis sp. PCC 6803

49.841

93.75

0.467