Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB4K06_RS23530 Genome accession   NZ_CP163458
Coordinates   4467518..4468036 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain N33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4462518..4473036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4K06_RS23500 (AB4K06_23500) yyaJ 4463021..4464376 (+) 1356 WP_003243011.1 MFS transporter -
  AB4K06_RS23505 (AB4K06_23505) maa 4464410..4464964 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  AB4K06_RS23510 (AB4K06_23510) yyaH 4464982..4465362 (-) 381 WP_003244460.1 VOC family protein -
  AB4K06_RS23515 (AB4K06_23515) ccpB 4465418..4466353 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  AB4K06_RS23520 (AB4K06_23520) xth 4466412..4467170 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  AB4K06_RS23525 (AB4K06_23525) rpsR 4467235..4467474 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  AB4K06_RS23530 (AB4K06_23530) ssbA 4467518..4468036 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  AB4K06_RS23535 (AB4K06_23535) rpsF 4468077..4468364 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  AB4K06_RS23540 (AB4K06_23540) ychF 4468475..4469575 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  AB4K06_RS23545 (AB4K06_23545) yyaE 4469702..4471705 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  AB4K06_RS23550 (AB4K06_23550) yyzM 4471756..4471962 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1030037 AB4K06_RS23530 WP_003219228.1 4467518..4468036(-) (ssbA) [Bacillus subtilis strain N33]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1030037 AB4K06_RS23530 WP_003219228.1 4467518..4468036(-) (ssbA) [Bacillus subtilis strain N33]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment