Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB5991_RS21940 Genome accession   NZ_CP163447
Coordinates   4103834..4104352 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SD2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4098834..4109352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5991_RS21915 (AB5991_21915) - 4099094..4100122 (+) 1029 WP_014481504.1 AAA family ATPase -
  AB5991_RS21920 (AB5991_21920) - 4100100..4101374 (+) 1275 WP_014481505.1 MFS transporter -
  AB5991_RS21925 (AB5991_21925) ccpB 4102294..4102668 (-) 375 Protein_4262 transcriptional regulator CcpB -
  AB5991_RS21930 (AB5991_21930) xth 4102728..4103486 (-) 759 WP_014481508.1 exodeoxyribonuclease III -
  AB5991_RS21935 (AB5991_21935) rpsR 4103551..4103790 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  AB5991_RS21940 (AB5991_21940) ssbA 4103834..4104352 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  AB5991_RS21945 (AB5991_21945) rpsF 4104393..4104680 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  AB5991_RS21950 (AB5991_21950) ychF 4104791..4105891 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  AB5991_RS21955 (AB5991_21955) yyaE 4106018..4108021 (-) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  AB5991_RS21960 (AB5991_21960) yyzM 4108072..4108278 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1029894 AB5991_RS21940 WP_003219228.1 4103834..4104352(-) (ssbA) [Bacillus subtilis strain SD2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1029894 AB5991_RS21940 WP_003219228.1 4103834..4104352(-) (ssbA) [Bacillus subtilis strain SD2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment