Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AACH36_RS02010 Genome accession   NZ_AP027939
Coordinates   423028..423594 (-) Length   188 a.a.
NCBI ID   WP_338611687.1    Uniprot ID   -
Organism   Aeromonas enteropelogenes strain VA111     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 418028..428594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH36_RS01985 (VAWG006_03750) - 418305..419663 (-) 1359 WP_042029078.1 NCS2 family permease -
  AACH36_RS01990 (VAWG006_03760) - 419965..420177 (-) 213 WP_026458175.1 cold-shock protein -
  AACH36_RS01995 (VAWG006_03770) - 420637..421539 (-) 903 WP_338611685.1 cation diffusion facilitator family transporter -
  AACH36_RS02000 (VAWG006_03780) - 421960..422085 (+) 126 WP_019445191.1 hypothetical protein -
  AACH36_RS02005 (VAWG006_03790) - 422160..422903 (-) 744 WP_338611686.1 transporter substrate-binding domain-containing protein -
  AACH36_RS02010 (VAWG006_03800) ssb 423028..423594 (-) 567 WP_338611687.1 single-stranded DNA-binding protein Machinery gene
  AACH36_RS02015 (VAWG006_03810) uvrA 423976..426801 (+) 2826 WP_338611688.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20827.27 Da        Isoelectric Point: 5.9301

>NTDB_id=102987 AACH36_RS02010 WP_338611687.1 423028..423594(-) (ssb) [Aeromonas enteropelogenes strain VA111]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFSGVMQMLGGRPQGAGQGMGGQNQGGWGQPQQAMQPPMNQQRPAPQQNMQQQGG
YGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=102987 AACH36_RS02010 WP_338611687.1 423028..423594(-) (ssb) [Aeromonas enteropelogenes strain VA111]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACCCTGGCCACCTCTGAAACCTGGCGCGACAAGCAAACCGGCGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAGGTCGCCGGCGAATACCTGAAAAAGGGTTCCCAGGTCTATGTG
GAAGGCAAGCTGCAAACCCGCAAATGGCAGGACCAGAGCGGCCAGGAACGCTATACCACCGAAGTGCTGGTCGACAGCTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGCCGGTCAGGGCATGGGTGGCCAGAACCAGGGTGGCTGGG
GCCAGCCGCAGCAGGCCATGCAGCCGCCGATGAATCAACAGCGTCCCGCTCCGCAGCAGAACATGCAGCAGCAGGGTGGT
TACGGCCGTCCGGCTCAGCAGCCCCAGTCAGCTCCGCCGGTCTATAACGAGCCGCCGATGGATTTCGACGACGATATTCC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.394

100

0.702
  ssb Glaesserella parasuis strain SC1401

53.763

98.936

0.532
  ssb Neisseria gonorrhoeae MS11

48.913

97.872

0.479
  ssb Neisseria meningitidis MC58

48.37

97.872

0.473

Multiple sequence alignment