Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | AB5991_RS12740 | Genome accession | NZ_CP163447 |
| Coordinates | 2371541..2371876 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain SD2 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2366541..2376876
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB5991_RS12720 (AB5991_12720) | gcvT | 2367133..2368221 (-) | 1089 | WP_014480247.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AB5991_RS12725 (AB5991_12725) | hepAA | 2368663..2370336 (+) | 1674 | WP_014480248.1 | DEAD/DEAH box helicase | - |
| AB5991_RS12730 (AB5991_12730) | yqhG | 2370357..2371151 (+) | 795 | WP_014480249.1 | YqhG family protein | - |
| AB5991_RS12735 (AB5991_12735) | sinI | 2371334..2371507 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| AB5991_RS12740 (AB5991_12740) | sinR | 2371541..2371876 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| AB5991_RS12745 (AB5991_12745) | tasA | 2371969..2372754 (-) | 786 | WP_014480250.1 | biofilm matrix protein TasA | - |
| AB5991_RS12750 (AB5991_12750) | sipW | 2372818..2373390 (-) | 573 | WP_003230181.1 | signal peptidase I SipW | - |
| AB5991_RS12755 (AB5991_12755) | tapA | 2373374..2374135 (-) | 762 | WP_014480251.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AB5991_RS12760 (AB5991_12760) | yqzG | 2374407..2374733 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| AB5991_RS12765 (AB5991_12765) | spoIITA | 2374775..2374954 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| AB5991_RS12770 (AB5991_12770) | comGG | 2375025..2375399 (-) | 375 | WP_014480253.1 | ComG operon protein ComGG | Machinery gene |
| AB5991_RS12775 (AB5991_12775) | comGF | 2375400..2375783 (-) | 384 | WP_014480254.1 | ComG operon protein ComGF | Machinery gene |
| AB5991_RS12780 (AB5991_12780) | comGE | 2375809..2376156 (-) | 348 | WP_014480255.1 | ComG operon protein 5 | Machinery gene |
| AB5991_RS12785 (AB5991_12785) | comGD | 2376140..2376571 (-) | 432 | WP_014480256.1 | comG operon protein ComGD | Machinery gene |
| AB5991_RS12790 (AB5991_12790) | comGC | 2376561..2376857 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=1029856 AB5991_RS12740 WP_003226345.1 2371541..2371876(+) (sinR) [Bacillus subtilis strain SD2]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=1029856 AB5991_RS12740 WP_003226345.1 2371541..2371876(+) (sinR) [Bacillus subtilis strain SD2]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |