Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AB5991_RS12790 Genome accession   NZ_CP163447
Coordinates   2376561..2376857 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain SD2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2371561..2381857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5991_RS12745 (AB5991_12745) tasA 2371969..2372754 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  AB5991_RS12750 (AB5991_12750) sipW 2372818..2373390 (-) 573 WP_003230181.1 signal peptidase I SipW -
  AB5991_RS12755 (AB5991_12755) tapA 2373374..2374135 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  AB5991_RS12760 (AB5991_12760) yqzG 2374407..2374733 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  AB5991_RS12765 (AB5991_12765) spoIITA 2374775..2374954 (-) 180 WP_014480252.1 YqzE family protein -
  AB5991_RS12770 (AB5991_12770) comGG 2375025..2375399 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  AB5991_RS12775 (AB5991_12775) comGF 2375400..2375783 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  AB5991_RS12780 (AB5991_12780) comGE 2375809..2376156 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  AB5991_RS12785 (AB5991_12785) comGD 2376140..2376571 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  AB5991_RS12790 (AB5991_12790) comGC 2376561..2376857 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  AB5991_RS12795 (AB5991_12795) comGB 2376871..2377908 (-) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  AB5991_RS12800 (AB5991_12800) comGA 2377895..2378965 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  AB5991_RS12805 (AB5991_12805) - 2379177..2379374 (-) 198 WP_014480259.1 CBS domain-containing protein -
  AB5991_RS12810 (AB5991_12810) corA 2379376..2380329 (-) 954 WP_014480260.1 magnesium transporter CorA -
  AB5991_RS12815 (AB5991_12815) yqhB 2380471..2381799 (+) 1329 WP_014480261.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=1029861 AB5991_RS12790 WP_003230162.1 2376561..2376857(-) (comGC) [Bacillus subtilis strain SD2]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1029861 AB5991_RS12790 WP_003230162.1 2376561..2376857(-) (comGC) [Bacillus subtilis strain SD2]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment