Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AACH65_RS18900 Genome accession   NZ_AP027937
Coordinates   4087349..4087936 (+) Length   195 a.a.
NCBI ID   WP_021231635.1    Uniprot ID   -
Organism   Aeromonas veronii strain VA60     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4082349..4092936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH65_RS18870 (VAWG004_37210) - 4082377..4083828 (-) 1452 WP_088870254.1 curlin -
  AACH65_RS18875 (VAWG004_37220) - 4083863..4084384 (-) 522 WP_088870255.1 curlin -
  AACH65_RS18880 (VAWG004_37230) - 4084572..4085411 (-) 840 WP_042080924.1 CsgG/HfaB family protein -
  AACH65_RS18885 (VAWG004_37240) - 4085419..4085820 (-) 402 WP_019445195.1 curli assembly protein CsgF -
  AACH65_RS18890 (VAWG004_37250) - 4085832..4086275 (-) 444 WP_088870256.1 curli production assembly/transport protein CsgE -
  AACH65_RS18895 (VAWG004_37260) - 4086275..4086922 (-) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  AACH65_RS18900 (VAWG004_37280) ssb 4087349..4087936 (+) 588 WP_021231635.1 single-stranded DNA-binding protein Machinery gene
  AACH65_RS18905 (VAWG004_37290) - 4088101..4089426 (+) 1326 WP_206221159.1 site-specific integrase -
  AACH65_RS18910 (VAWG004_37300) - 4089419..4090987 (+) 1569 WP_206221158.1 site-specific integrase -
  AACH65_RS18915 (VAWG004_37310) - 4090997..4092874 (+) 1878 WP_242525569.1 integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21493.96 Da        Isoelectric Point: 5.9247

>NTDB_id=102981 AACH65_RS18900 WP_021231635.1 4087349..4087936(+) (ssb) [Aeromonas veronii strain VA60]
MASRGINKVILIGNLGKDPEVRYMPSGNAVANITLATSETWRDKQTGEQKERTEWHNVSLIGKLAEIAGEYLKKGSQVYV
EGKLQTRKWQDQSGQDRYTTEVLVDSFTGVMQMLGGRSQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=102981 AACH65_RS18900 WP_021231635.1 4087349..4087936(+) (ssb) [Aeromonas veronii strain VA60]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGAAAGACCCGGAAGTACGCTACATGCCGAGTGG
CAATGCTGTGGCCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCATAACGTGTCTTTGATTGGCAAGCTGGCAGAGATTGCTGGTGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGTAAATGGCAGGATCAAAGTGGTCAAGATCGTTATACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTTCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AATATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.844

100

0.703
  ssb Glaesserella parasuis strain SC1401

53.368

98.974

0.528
  ssb Neisseria gonorrhoeae MS11

47.368

97.436

0.462
  ssb Neisseria meningitidis MC58

46.842

97.436

0.456

Multiple sequence alignment