Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB6B39_RS10425 Genome accession   NZ_CP163424
Coordinates   2133614..2134117 (-) Length   167 a.a.
NCBI ID   WP_284370641.1    Uniprot ID   -
Organism   Algimonas porphyrae strain LMG 26424     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2128614..2139117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6B39_RS10405 (AB6B39_10415) - 2129226..2130533 (-) 1308 WP_284370649.1 ATP-binding protein -
  AB6B39_RS10410 (AB6B39_10420) - 2130539..2131261 (-) 723 WP_284370646.1 response regulator -
  AB6B39_RS10415 (AB6B39_10425) - 2131357..2132151 (+) 795 WP_371398561.1 branched-chain amino acid aminotransferase -
  AB6B39_RS10420 (AB6B39_10430) - 2133148..2133501 (-) 354 WP_284370643.1 DUF1428 domain-containing protein -
  AB6B39_RS10425 (AB6B39_10435) ssb 2133614..2134117 (-) 504 WP_284370641.1 single-stranded DNA-binding protein Machinery gene
  AB6B39_RS10430 (AB6B39_10440) uvrA 2134419..2137283 (+) 2865 WP_348520146.1 excinuclease ABC subunit UvrA -
  AB6B39_RS10435 (AB6B39_10445) - 2137351..2137800 (+) 450 WP_284370633.1 hypothetical protein -
  AB6B39_RS10440 (AB6B39_10450) - 2137853..2138965 (-) 1113 WP_284370631.1 energy transducer TonB -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17893.63 Da        Isoelectric Point: 5.9731

>NTDB_id=1029632 AB6B39_RS10425 WP_284370641.1 2133614..2134117(-) (ssb) [Algimonas porphyrae strain LMG 26424]
MAGSVNKVILVGNLGADPEVRTFGNGGKVAKLRMATSETWKDRQSGERREKTEWHTVEVFGEGLVGVIERYVNKGSKLYI
EGQLTTEKWQDRDGNDRYTTKVKVAGPNSNLTMLDSRSSGGGGGGGRSGGGGDFNQDRGYNQGGGSRSAANMDGPKGDFD
LDDEIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1029632 AB6B39_RS10425 WP_284370641.1 2133614..2134117(-) (ssb) [Algimonas porphyrae strain LMG 26424]
ATGGCAGGTTCAGTCAATAAGGTCATTCTCGTCGGCAATCTCGGAGCCGATCCCGAAGTTCGCACCTTCGGCAATGGCGG
CAAGGTCGCCAAATTGCGCATGGCCACATCCGAAACATGGAAAGACCGGCAGAGCGGCGAACGCCGAGAGAAAACAGAAT
GGCATACGGTCGAAGTCTTCGGCGAAGGCCTGGTCGGCGTCATCGAACGCTACGTCAATAAAGGCTCCAAGCTCTATATC
GAAGGTCAGCTGACAACCGAGAAGTGGCAGGACCGGGACGGCAATGACCGCTACACGACCAAGGTCAAGGTCGCGGGCCC
GAACAGCAACCTGACGATGCTGGACAGCCGCAGTTCCGGCGGCGGTGGTGGCGGTGGCCGAAGCGGTGGCGGCGGCGACT
TTAATCAGGATCGCGGCTATAATCAGGGCGGCGGCTCCCGCTCGGCGGCGAATATGGACGGGCCGAAGGGCGACTTCGAC
CTGGACGACGAGATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.809

100

0.527
  ssb Vibrio cholerae strain A1552

46.243

100

0.479
  ssb Neisseria meningitidis MC58

33.155

100

0.371
  ssb Neisseria gonorrhoeae MS11

33.155

100

0.371

Multiple sequence alignment