Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB6B37_RS09240 Genome accession   NZ_CP163423
Coordinates   1982763..1983287 (-) Length   174 a.a.
NCBI ID   WP_371395485.1    Uniprot ID   -
Organism   Fretibacter rubidus strain JCM 15585     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1977763..1988287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6B37_RS09225 (AB6B37_09225) - 1980497..1981273 (-) 777 WP_371395482.1 hypothetical protein -
  AB6B37_RS09230 (AB6B37_09230) - 1981270..1982007 (-) 738 WP_371395483.1 hypothetical protein -
  AB6B37_RS09235 (AB6B37_09235) - 1982148..1982693 (+) 546 WP_371395484.1 superoxide dismutase family protein -
  AB6B37_RS09240 (AB6B37_09240) ssb 1982763..1983287 (-) 525 WP_371395485.1 single-stranded DNA-binding protein Machinery gene
  AB6B37_RS09245 (AB6B37_09245) uvrA 1983475..1986375 (+) 2901 WP_371395486.1 excinuclease ABC subunit UvrA -
  AB6B37_RS09250 (AB6B37_09250) - 1986594..1988186 (+) 1593 WP_371395487.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18464.13 Da        Isoelectric Point: 5.0178

>NTDB_id=1029624 AB6B37_RS09240 WP_371395485.1 1982763..1983287(-) (ssb) [Fretibacter rubidus strain JCM 15585]
MAGSVNKVILIGNVGKDPEVRTFGNGGKVCNFSIATSESWKDKQTGERKEKTDWHNIAIFNEGLVGIVERYVKKGTKVYI
EGALKTRKWQDRDGNDRYTTEVVLQGYNGNLTLLDSRNSQGGGGGGGDYGNQGGGYGGGGGQGNYGNDQGGGSRSASAME
GPADNFDLDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1029624 AB6B37_RS09240 WP_371395485.1 1982763..1983287(-) (ssb) [Fretibacter rubidus strain JCM 15585]
ATGGCGGGTTCAGTCAATAAAGTAATTTTAATCGGCAATGTCGGTAAAGATCCAGAGGTTCGCACCTTTGGTAATGGCGG
CAAGGTTTGCAATTTTTCTATCGCAACATCAGAGTCGTGGAAAGATAAGCAGACGGGCGAACGCAAAGAGAAAACCGATT
GGCACAATATCGCGATTTTCAACGAAGGCCTTGTCGGTATCGTCGAGCGCTACGTTAAAAAAGGTACAAAGGTCTATATC
GAAGGCGCATTGAAAACGCGTAAGTGGCAAGACCGTGACGGCAATGATCGTTACACGACCGAGGTGGTGTTGCAGGGCTA
TAACGGTAATTTGACGCTGCTTGATAGCCGCAACAGTCAAGGTGGCGGCGGCGGTGGCGGTGATTACGGCAACCAAGGCG
GCGGTTATGGCGGCGGCGGCGGCCAAGGCAATTACGGCAATGATCAAGGCGGGGGATCACGGTCAGCCTCTGCCATGGAA
GGCCCAGCGGATAACTTTGACCTTGATGATGAAATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.236

100

0.54
  ssb Vibrio cholerae strain A1552

45.556

100

0.471
  ssb Neisseria meningitidis MC58

39.665

100

0.408
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.408

Multiple sequence alignment