Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB6B38_RS04900 Genome accession   NZ_CP163421
Coordinates   996805..997278 (-) Length   157 a.a.
NCBI ID   WP_371394655.1    Uniprot ID   -
Organism   Glycocaulis abyssi strain LMG 27140     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 991805..1002278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6B38_RS04890 (AB6B38_04890) - 994913..995956 (+) 1044 WP_371394653.1 Kelch repeat-containing protein -
  AB6B38_RS04895 (AB6B38_04895) - 995983..996768 (-) 786 WP_371394654.1 penicillin-binding transpeptidase domain-containing protein -
  AB6B38_RS04900 (AB6B38_04900) ssb 996805..997278 (-) 474 WP_371394655.1 single-stranded DNA-binding protein Machinery gene
  AB6B38_RS04905 (AB6B38_04905) - 997459..997860 (+) 402 WP_371394656.1 hypothetical protein -
  AB6B38_RS04910 (AB6B38_04910) - 998004..998177 (-) 174 WP_371394657.1 hypothetical protein -
  AB6B38_RS04915 (AB6B38_04915) uvrA 998292..1001183 (+) 2892 WP_371394658.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17322.17 Da        Isoelectric Point: 5.9776

>NTDB_id=1029616 AB6B38_RS04900 WP_371394655.1 996805..997278(-) (ssb) [Glycocaulis abyssi strain LMG 27140]
MAGSINKVIIIGNLGADPEVKAMPSGDRMAKFPVATSETWRDKSTGERREKTEWHNVVIFNEALAKVAENYLKKGAKVYI
EGSLQTRKWQDQNGQDRYSTEIVLQKYRGELTMLDSKGEGGGSGGGNYGRSDDRSSGGNDRPRESFASDTLDDNIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1029616 AB6B38_RS04900 WP_371394655.1 996805..997278(-) (ssb) [Glycocaulis abyssi strain LMG 27140]
ATGGCAGGCAGCATCAACAAGGTCATCATTATCGGCAATCTGGGCGCTGACCCGGAGGTCAAGGCCATGCCGTCCGGTGA
CCGGATGGCGAAATTTCCCGTCGCGACGTCTGAGACCTGGCGCGACAAATCCACCGGAGAGCGCCGCGAAAAGACCGAAT
GGCACAACGTGGTCATCTTCAACGAGGCACTCGCCAAGGTGGCGGAGAACTATCTGAAAAAAGGCGCCAAGGTTTACATT
GAAGGCTCGCTGCAGACCCGCAAATGGCAGGATCAGAACGGGCAGGACCGCTATTCCACCGAGATCGTTCTGCAAAAATA
TCGCGGCGAGCTGACCATGCTGGACAGCAAGGGCGAGGGCGGCGGTTCGGGCGGTGGCAATTATGGCCGCTCCGATGACC
GTTCCTCTGGCGGCAATGACCGCCCGCGTGAAAGTTTTGCTTCCGACACGCTGGACGACAACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.594

100

0.567
  ssb Vibrio cholerae strain A1552

49.133

100

0.541
  ssb Neisseria meningitidis MC58

39.665

100

0.452
  ssb Neisseria gonorrhoeae MS11

46.043

88.535

0.408

Multiple sequence alignment