Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB6N06_RS00280 Genome accession   NZ_CP163407
Coordinates   60223..60708 (-) Length   161 a.a.
NCBI ID   WP_084827541.1    Uniprot ID   -
Organism   Serratia marcescens strain 1.8.3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 55223..65708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6N06_RS00245 (AB6N06_00245) - 55630..56256 (-) 627 WP_369606040.1 restriction endonuclease -
  AB6N06_RS00250 (AB6N06_00250) - 56253..56777 (-) 525 WP_369606041.1 integrating conjugative element protein -
  AB6N06_RS00255 (AB6N06_00255) - 56780..57472 (-) 693 WP_369606042.1 transglycosylase SLT domain-containing protein -
  AB6N06_RS00260 (AB6N06_00260) - 57451..58161 (-) 711 WP_369606414.1 TIGR03759 family integrating conjugative element protein -
  AB6N06_RS00265 (AB6N06_00265) - 58172..58915 (-) 744 WP_369606043.1 hypothetical protein -
  AB6N06_RS00270 (AB6N06_00270) - 58912..59556 (-) 645 WP_099784037.1 PilL N-terminal domain-containing protein -
  AB6N06_RS00275 (AB6N06_00275) - 59704..60144 (-) 441 WP_099784035.1 DUF29 domain-containing protein -
  AB6N06_RS00280 (AB6N06_00280) ssb 60223..60708 (-) 486 WP_084827541.1 single-stranded DNA-binding protein Machinery gene
  AB6N06_RS00285 (AB6N06_00285) - 60781..61248 (-) 468 WP_060558277.1 STY4534 family ICE replication protein -
  AB6N06_RS00290 (AB6N06_00290) - 61924..63963 (-) 2040 WP_369606044.1 DNA topoisomerase III -
  AB6N06_RS00295 (AB6N06_00295) - 63977..64549 (-) 573 WP_195880173.1 hypothetical protein -
  AB6N06_RS00300 (AB6N06_00300) - 64546..65289 (-) 744 WP_197784807.1 PFL_4669 family integrating conjugative element protein -
  AB6N06_RS00305 (AB6N06_00305) - 65309..65647 (-) 339 WP_369606045.1 hypothetical protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17471.38 Da        Isoelectric Point: 5.6811

>NTDB_id=1029524 AB6N06_RS00280 WP_084827541.1 60223..60708(-) (ssb) [Serratia marcescens strain 1.8.3]
MASRGVNKVILVGHLGQDPEVRYMPNGGAVATLSLATSETWRDKQSGEQKEKTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGALRTRKWADQSGQDRYTTEVVVNVGGTMQMLGGRSQTDNPGPSASGSWGQPQQPTHSGTPPQASAGNEPPMDFDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=1029524 AB6N06_RS00280 WP_084827541.1 60223..60708(-) (ssb) [Serratia marcescens strain 1.8.3]
ATGGCGTCTCGCGGCGTAAACAAAGTCATACTTGTCGGTCACCTTGGCCAGGATCCTGAAGTCCGTTACATGCCAAATGG
TGGTGCGGTTGCCACCCTGTCGCTTGCGACCTCCGAGACCTGGCGTGATAAACAATCCGGCGAACAGAAAGAAAAAACCG
AATGGCACCGTGTGGTGCTGTTTGGCAAACTAGCTGAAATTGCCGGCGAATACTTGCGTAAAGGTTCGCAGGTCTATATT
GAAGGCGCTTTGCGCACGCGTAAATGGGCAGATCAGAGCGGCCAGGATCGCTACACTACTGAGGTAGTCGTTAACGTGGG
CGGCACGATGCAGATGCTGGGTGGTCGTAGTCAGACCGATAACCCGGGGCCCTCAGCGTCTGGTAGTTGGGGGCAACCTC
AGCAACCGACCCACAGTGGTACACCCCCTCAGGCGTCTGCCGGCAATGAACCGCCGATGGACTTTGATGATGACATCCCA
TTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.621

100

0.776
  ssb Glaesserella parasuis strain SC1401

53.039

100

0.596
  ssb Neisseria meningitidis MC58

44.068

100

0.484
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.484

Multiple sequence alignment