Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AB4670_RS01470 Genome accession   NZ_CP163382
Coordinates   317123..317863 (+) Length   246 a.a.
NCBI ID   WP_000076099.1    Uniprot ID   A0A9P2QDS6
Organism   Acinetobacter baumannii strain Y03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 312123..322863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4670_RS01455 (AB4670_01455) ponA 312711..315266 (-) 2556 WP_005109330.1 penicillin-binding protein PBP1a -
  AB4670_RS01460 (AB4670_01460) pilM 315427..316485 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AB4670_RS01465 (AB4670_01465) pilN 316485..317126 (+) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  AB4670_RS01470 (AB4670_01470) pilO 317123..317863 (+) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB4670_RS01475 (AB4670_01475) pilP 317874..318401 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AB4670_RS01480 (AB4670_01480) pilQ 318469..320634 (+) 2166 WP_272282496.1 type IV pilus secretin PilQ family protein Machinery gene
  AB4670_RS01485 (AB4670_01485) aroK 320646..321215 (+) 570 WP_000643712.1 shikimate kinase AroK -
  AB4670_RS01490 (AB4670_01490) aroB 321244..322326 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27801.55 Da        Isoelectric Point: 4.8357

>NTDB_id=1029459 AB4670_RS01470 WP_000076099.1 317123..317863(+) (pilO) [Acinetobacter baumannii strain Y03]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1029459 AB4670_RS01470 WP_000076099.1 317123..317863(+) (pilO) [Acinetobacter baumannii strain Y03]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment