Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AB4670_RS01465 Genome accession   NZ_CP163382
Coordinates   316485..317126 (+) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain Y03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 311485..322126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4670_RS01445 (AB4670_01445) - 311534..311866 (+) 333 WP_000169602.1 hypothetical protein -
  AB4670_RS01450 (AB4670_01450) - 311869..312693 (+) 825 WP_373658997.1 putative RNA methyltransferase -
  AB4670_RS01455 (AB4670_01455) ponA 312711..315266 (-) 2556 WP_005109330.1 penicillin-binding protein PBP1a -
  AB4670_RS01460 (AB4670_01460) pilM 315427..316485 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AB4670_RS01465 (AB4670_01465) pilN 316485..317126 (+) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  AB4670_RS01470 (AB4670_01470) pilO 317123..317863 (+) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB4670_RS01475 (AB4670_01475) pilP 317874..318401 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AB4670_RS01480 (AB4670_01480) pilQ 318469..320634 (+) 2166 WP_272282496.1 type IV pilus secretin PilQ family protein Machinery gene
  AB4670_RS01485 (AB4670_01485) aroK 320646..321215 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=1029458 AB4670_RS01465 WP_000201224.1 316485..317126(+) (pilN) [Acinetobacter baumannii strain Y03]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1029458 AB4670_RS01465 WP_000201224.1 316485..317126(+) (pilN) [Acinetobacter baumannii strain Y03]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTGGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment