Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   BQ3358_RS08265 Genome accession   NZ_LT615218
Coordinates   1670071..1670673 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain AUS0325     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1665071..1675673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ3358_RS08245 yajC 1666567..1666827 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  BQ3358_RS08250 tgt 1666846..1667985 (-) 1140 WP_001112042.1 tRNA guanosine(34) transglycosylase Tgt -
  BQ3358_RS08255 queA 1668008..1669033 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  BQ3358_RS08260 ruvB 1669035..1670039 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BQ3358_RS08265 ruvA 1670071..1670673 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  BQ3358_RS08270 - 1670687..1671142 (-) 456 WP_064127123.1 ACT domain-containing protein -
  BQ3358_RS08275 obgE 1671155..1672447 (-) 1293 WP_000496100.1 GTPase ObgE -
  BQ3358_RS08280 rpmA 1672933..1673217 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  BQ3358_RS08285 - 1673229..1673549 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  BQ3358_RS08290 rplU 1673555..1673863 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  BQ3358_RS08295 mreD 1674156..1674686 (-) 531 WP_001259924.1 rod shape-determining protein MreD -
  BQ3358_RS08300 mreC 1674686..1675528 (-) 843 WP_000911040.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=1029454 BQ3358_RS08265 WP_000271547.1 1670071..1670673(-) (ruvA) [Staphylococcus aureus strain AUS0325]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1029454 BQ3358_RS08265 WP_000271547.1 1670071..1670673(-) (ruvA) [Staphylococcus aureus strain AUS0325]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGCAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment