Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   AB4X21_RS03740 Genome accession   NZ_CP163380
Coordinates   709414..711378 (-) Length   654 a.a.
NCBI ID   WP_369088206.1    Uniprot ID   A0AB39LG20
Organism   Streptococcus sp. CP1998     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 704414..716378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4X21_RS03725 (AB4X21_03725) - 705748..706365 (+) 618 WP_155125560.1 DUF1307 domain-containing protein -
  AB4X21_RS03730 (AB4X21_03730) - 706551..707318 (+) 768 WP_369088204.1 ABC transporter ATP-binding protein -
  AB4X21_RS03735 (AB4X21_03735) - 707311..709314 (+) 2004 WP_369088205.1 FtsX-like permease family protein -
  AB4X21_RS03740 (AB4X21_03740) amiA 709414..711378 (-) 1965 WP_369088206.1 peptide ABC transporter substrate-binding protein Regulator
  AB4X21_RS03745 (AB4X21_03745) - 711634..711960 (+) 327 WP_369088207.1 PadR family transcriptional regulator -
  AB4X21_RS03750 (AB4X21_03750) - 711957..712757 (+) 801 WP_369088208.1 hypothetical protein -
  AB4X21_RS03755 (AB4X21_03755) - 712754..713584 (+) 831 WP_369088209.1 hypothetical protein -
  AB4X21_RS03760 (AB4X21_03760) - 713806..715196 (+) 1391 Protein_688 APC family permease -
  AB4X21_RS03765 (AB4X21_03765) - 715301..715537 (+) 237 WP_000141913.1 DUF2829 domain-containing protein -
  AB4X21_RS03770 (AB4X21_03770) - 715530..716228 (+) 699 WP_369088210.1 3-oxoacyl-ACP reductase -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72528.53 Da        Isoelectric Point: 4.9733

>NTDB_id=1029424 AB4X21_RS03740 WP_369088206.1 709414..711378(-) (amiA) [Streptococcus sp. CP1998]
MKKSKLALLAGVAAASTLFLAACGSSSNSSKGTTYNYVYGTDPDSLNYLTSNRSTTSDITTNLVDGLFENDQYGNLVPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAHDFVTALKYVADKKSDALYLVQNSVKGLDNYVNGKTKDFSTVGI
KAVDDYTLQYTLNQPESFWNSKLTTSTMMPVNEKFLESAGKDFGSVKPNGILYNGPYILKSFTSKSQIELDKNPEYYDKK
NVHIDTVKLTYFDGSDQDYLARNFSDGNLSTARLFPTSSTYSTIEKKFKDNIVYTPQDSTVYYAYFNVNRQNYGHTKKTS
DEQKNSTKTALQNKNFRQALNFALDRTSYSAQVNGKDGATKTLRTLLVPPTFVQADGKDFGTLVEEKLAATGDEWKGVSF
ADAQDSLHNADKAKAELEKAKAELQSQGVQFPIHIDYVVDQSSNALVQQADSMKSSIEASLGKDNVVIDVQKLSTDDADN
ATYFAQSPDQKDFDMDITGWGPDFQDPSTYLDILNPTDGSTLTGMGLDPKKDQALIEKIGLNEYKALLDAANDEKLDTNA
RYEKYAAAQAWLTENAMVLPIYSKGGVPSITKVTPFSAANSAIGIKGETSFFKYQKVQDKTVTTADYEKAYKNWLKEKEE
SNKKAQEELAKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=1029424 AB4X21_RS03740 WP_369088206.1 709414..711378(-) (amiA) [Streptococcus sp. CP1998]
ATGAAAAAATCGAAGCTTGCTCTTTTAGCTGGTGTAGCCGCTGCTTCAACGCTTTTCCTTGCTGCATGTGGTTCATCTTC
TAACTCATCAAAGGGAACAACCTACAACTACGTGTATGGTACAGACCCTGATTCCTTGAACTATTTGACTTCAAATCGTT
CAACTACAAGCGACATTACAACCAACTTGGTCGACGGTTTGTTTGAAAACGACCAATACGGTAACCTAGTGCCTGCTCTT
GCAGAGGACTGGTCCGTTTCAAAAGACGGTCTGACTTATACTTACAAGCTTCGAAAAGATGCGAAGTGGTATGATTCAGA
AGGAAATGAATACGCTGACGTCACTGCACATGATTTCGTGACAGCTCTGAAATATGTAGCCGATAAAAAATCCGATGCTC
TTTACTTGGTTCAAAACTCAGTCAAAGGCTTGGATAATTACGTAAACGGGAAAACTAAAGACTTCTCAACTGTTGGAATC
AAGGCTGTTGATGATTATACTCTTCAATATACTTTGAACCAACCAGAATCTTTCTGGAATTCTAAATTGACCACTTCTAC
CATGATGCCGGTCAATGAAAAATTCTTGGAATCAGCTGGTAAGGACTTTGGTAGCGTGAAACCAAATGGTATCCTCTACA
ACGGTCCATACATTTTGAAATCCTTCACTTCAAAATCACAAATTGAGTTGGATAAAAACCCTGAATACTACGACAAGAAA
AATGTTCACATCGATACTGTTAAATTAACGTACTTCGATGGATCAGACCAAGACTATCTTGCTCGTAACTTCTCAGATGG
TAACCTATCTACTGCTCGTCTCTTCCCAACTAGCTCAACCTACAGTACGATTGAGAAGAAATTCAAAGATAACATCGTTT
ATACCCCACAAGACTCTACTGTTTACTACGCTTACTTCAACGTCAACCGTCAAAACTACGGTCATACTAAGAAGACATCG
GATGAGCAAAAGAACAGCACCAAGACAGCTCTTCAAAACAAAAACTTCCGTCAAGCTTTGAACTTTGCTTTAGATAGAAC
TTCCTACAGCGCTCAAGTGAACGGAAAAGACGGAGCAACAAAAACTCTTCGTACCCTTCTAGTTCCACCGACATTTGTGC
AAGCAGACGGGAAAGACTTCGGTACTCTCGTTGAAGAAAAACTTGCCGCAACAGGAGATGAGTGGAAAGGTGTTAGCTTC
GCTGATGCTCAAGATAGCTTGCATAATGCAGATAAAGCCAAAGCAGAACTTGAAAAAGCTAAGGCTGAATTGCAATCGCA
AGGTGTTCAATTCCCAATCCATATCGACTATGTTGTAGACCAATCTTCTAATGCTCTTGTCCAACAAGCAGACTCTATGA
AGAGCTCAATCGAAGCGTCCCTTGGTAAAGACAATGTCGTGATCGATGTACAAAAATTGTCTACAGACGATGCTGATAAC
GCTACTTACTTTGCTCAATCACCAGACCAAAAAGACTTTGATATGGATATCACTGGTTGGGGACCTGACTTCCAAGACCC
ATCTACTTACTTGGATATCTTAAACCCAACAGATGGTTCAACCTTGACTGGTATGGGACTTGATCCTAAGAAAGACCAAG
CGCTCATCGAGAAAATTGGTTTGAACGAATACAAAGCCTTGCTAGATGCTGCCAATGATGAAAAATTGGATACCAATGCA
CGTTATGAAAAATATGCTGCTGCCCAAGCTTGGTTGACAGAAAATGCTATGGTTCTTCCAATCTACTCTAAGGGTGGCGT
TCCATCTATCACCAAGGTCACACCATTCTCAGCAGCAAATTCTGCAATTGGTATTAAAGGGGAAACAAGCTTCTTCAAAT
ACCAAAAAGTTCAAGACAAGACTGTCACAACTGCGGACTACGAAAAAGCGTATAAGAATTGGTTGAAAGAAAAAGAAGAA
TCCAATAAAAAAGCGCAAGAAGAACTTGCAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.839

100

0.572
  amiA3 Streptococcus thermophilus LMG 18311

55.842

100

0.563
  amiA3 Streptococcus thermophilus LMD-9

55.842

100

0.563

Multiple sequence alignment