Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   AB4X21_RS03350 Genome accession   NZ_CP163380
Coordinates   626395..627054 (-) Length   219 a.a.
NCBI ID   WP_155125484.1    Uniprot ID   A0A6A8V9X8
Organism   Streptococcus sp. CP1998     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 621395..632054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4X21_RS03330 (AB4X21_03330) - 622597..623172 (+) 576 WP_045759156.1 YutD-like domain-containing protein -
  AB4X21_RS03335 (AB4X21_03335) rlmN 623179..624267 (+) 1089 WP_003005918.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  AB4X21_RS03340 (AB4X21_03340) - 624254..624781 (+) 528 WP_155125480.1 VanZ family protein -
  AB4X21_RS03345 (AB4X21_03345) trpB 625206..626387 (+) 1182 WP_369088171.1 tryptophan synthase subunit beta -
  AB4X21_RS03350 (AB4X21_03350) cclA/cilC 626395..627054 (-) 660 WP_155125484.1 A24 family peptidase Machinery gene
  AB4X21_RS03355 (AB4X21_03355) - 627142..627360 (+) 219 WP_003017930.1 YqgQ family protein -
  AB4X21_RS03360 (AB4X21_03360) - 627360..627743 (+) 384 WP_049503555.1 rhodanese-like domain-containing protein -
  AB4X21_RS03365 (AB4X21_03365) - 627787..628512 (-) 726 WP_155125486.1 16S rRNA pseudouridine(516) synthase -
  AB4X21_RS03370 (AB4X21_03370) typA 628691..630538 (+) 1848 WP_003011633.1 translational GTPase TypA -
  AB4X21_RS03375 (AB4X21_03375) - 630562..630816 (+) 255 WP_155125488.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25092.22 Da        Isoelectric Point: 7.7567

>NTDB_id=1029421 AB4X21_RS03350 WP_155125484.1 626395..627054(-) (cclA/cilC) [Streptococcus sp. CP1998]
MINFYFFTIGTCIASFLGLVVDRFPNQSILTPRSHCDQCQHVLGVWDLIPILSQLLHRFRCRYCHQIYPFWYCLFEVWSG
LLFLACANGYLSLPQLLTLLGAAVLAIYDLRFMEYPLFIWCCLHALVLFLSGSNLLMLVFLLLAIGAHFFFIGMGAGDFL
LLATFSLSFSSTQILILIQIASILGILVFALKKERDRIPFVPCLFLSYHALLLYTMFCR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1029421 AB4X21_RS03350 WP_155125484.1 626395..627054(-) (cclA/cilC) [Streptococcus sp. CP1998]
ATGATCAACTTTTATTTTTTTACCATCGGTACTTGCATCGCCTCTTTTTTGGGACTAGTAGTCGATCGTTTTCCAAACCA
ATCCATTCTCACTCCTCGCAGTCATTGCGATCAATGCCAGCACGTCCTTGGAGTTTGGGACCTCATCCCTATCCTCTCGC
AACTCCTGCATCGCTTTCGCTGTCGCTATTGTCATCAGATCTACCCATTTTGGTACTGCCTTTTTGAGGTCTGGAGTGGC
CTGCTCTTTTTAGCCTGCGCCAATGGTTACCTTTCCCTGCCTCAACTTCTAACACTACTGGGAGCTGCCGTTTTAGCCAT
CTATGACCTTCGCTTTATGGAATACCCTTTATTCATCTGGTGCTGTCTCCATGCCCTGGTCCTCTTTTTATCCGGTAGTA
ATCTCCTCATGCTGGTCTTTTTACTCCTTGCGATCGGAGCTCACTTTTTCTTTATCGGAATGGGAGCAGGAGATTTTCTC
TTACTAGCTACCTTTTCGCTAAGCTTTTCTTCTACCCAGATCCTCATTCTCATTCAGATCGCATCCATCTTAGGCATTCT
CGTCTTTGCTCTCAAAAAAGAAAGAGACCGGATTCCCTTTGTTCCCTGTCTCTTTCTCAGTTATCACGCTTTACTGCTTT
ATACGATGTTTTGCAGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8V9X8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

56.039

94.521

0.53
  cclA/cilC Streptococcus mitis SK321

55.556

94.521

0.525
  cclA/cilC Streptococcus pneumoniae TIGR4

55.556

94.521

0.525
  cclA/cilC Streptococcus pneumoniae Rx1

55.556

94.521

0.525
  cclA/cilC Streptococcus pneumoniae D39

55.556

94.521

0.525
  cclA/cilC Streptococcus pneumoniae R6

55.556

94.521

0.525

Multiple sequence alignment