Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABUK12_RS14905 Genome accession   NZ_CP163303
Coordinates   3314422..3314982 (-) Length   186 a.a.
NCBI ID   WP_410012600.1    Uniprot ID   -
Organism   Sodalis sp. C49 strain Strides     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3309422..3319982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUK12_RS14895 (ABUK12_14895) - 3310128..3311672 (+) 1545 WP_410012598.1 amidohydrolase family protein -
  ABUK12_RS14900 (ABUK12_14900) - 3311928..3313808 (-) 1881 WP_410012599.1 group II intron reverse transcriptase -
  ABUK12_RS14905 (ABUK12_14905) ssb 3314422..3314982 (-) 561 WP_410012600.1 single-stranded DNA-binding protein Machinery gene
  ABUK12_RS14910 (ABUK12_14910) uvrA 3315243..3318098 (+) 2856 WP_410012601.1 excinuclease ABC subunit UvrA -
  ABUK12_RS14915 (ABUK12_14915) - 3318155..3318799 (-) 645 WP_410012602.1 TenA family protein -
  ABUK12_RS14920 (ABUK12_14920) - 3318802..3319644 (-) 843 WP_410012603.1 BtpA/SgcQ family protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19313.36 Da        Isoelectric Point: 5.2456

>NTDB_id=1029378 ABUK12_RS14905 WP_410012600.1 3314422..3314982(-) (ssb) [Sodalis sp. C49 strain Strides]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANMTLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGALQTRKWTDQGGQERYTTEVVVNVGGTMQMLGGRQGGGAAGAGAGGGQQGWGQPQQPQGGNAQFSGNPGGAAPAAPAA
SRPAAQNNAPAAGNEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1029378 ABUK12_RS14905 WP_410012600.1 3314422..3314982(-) (ssb) [Sodalis sp. C49 strain Strides]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTAGTCGGAAATCTGGGCCAGGATCCGGAAGTCCGCTACATGCCGAACGG
TGGCGCCGTGGCCAATATGACTCTGGCCACTTCCGAGAGCTGGCGCGACAAGCAGACCGGCGAGACCAAGGAAAAAACGG
AATGGCATCGCGTGGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGCGAATATCTGAAAAAAGGGTCGCAGGTCTATATC
GAAGGCGCGTTGCAAACGCGTAAATGGACCGATCAGGGTGGCCAGGAACGTTACACCACCGAAGTCGTGGTGAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGCCAGGGCGGCGGCGCGGCGGGTGCCGGCGCGGGCGGCGGCCAGCAGGGCTGGG
GCCAGCCGCAGCAGCCGCAGGGCGGCAACGCGCAGTTCAGCGGCAATCCGGGCGGCGCGGCGCCGGCGGCGCCCGCGGCC
AGTCGTCCCGCCGCGCAGAACAATGCGCCGGCCGCGGGCAATGAGCCGCCGATGGATTTTGACGACGATATCCCGTTTTA
G

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.539

100

0.694
  ssb Glaesserella parasuis strain SC1401

55.851

100

0.565
  ssb Neisseria meningitidis MC58

47.253

97.849

0.462
  ssb Neisseria gonorrhoeae MS11

47.253

97.849

0.462

Multiple sequence alignment