Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   STACADC2_RS06600 Genome accession   NZ_LT604076
Coordinates   1241368..1242054 (-) Length   228 a.a.
NCBI ID   WP_087010070.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ACA-DC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1236368..1247054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STACADC2_RS06570 (STACADC2_1246) - 1236449..1237024 (+) 576 WP_002951444.1 CYTH domain-containing protein -
  STACADC2_RS06575 (STACADC2_1247) - 1237387..1238358 (+) 972 WP_002951446.1 ribose-phosphate diphosphokinase -
  STACADC2_RS06580 (STACADC2_1248) - 1238362..1239474 (+) 1113 WP_002948029.1 cysteine desulfurase family protein -
  STACADC2_RS06585 (STACADC2_1249) - 1239476..1239823 (+) 348 WP_011226321.1 DUF1831 domain-containing protein -
  STACADC2_RS06590 (STACADC2_1250) - 1239968..1240627 (+) 660 WP_087010069.1 redox-sensing transcriptional repressor Rex -
  STACADC2_RS06595 (STACADC2_1251) - 1240620..1241315 (+) 696 WP_002951449.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  STACADC2_RS06600 (STACADC2_1252) radC 1241368..1242054 (-) 687 WP_087010070.1 RadC family protein Machinery gene
  STACADC2_RS06605 (STACADC2_1253) - 1242103..1243887 (-) 1785 WP_087010071.1 rhamnan synthesis F family protein -
  STACADC2_RS06610 (STACADC2_1254) - 1243884..1244939 (-) 1056 WP_002948022.1 glycosyltransferase family 2 protein -
  STACADC2_RS06615 (STACADC2_1255) - 1244959..1246164 (-) 1206 WP_014727633.1 ABC transporter ATP-binding protein -
  STACADC2_RS06620 (STACADC2_1256) - 1246164..1246973 (-) 810 WP_002948020.1 ABC transporter permease -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25821.87 Da        Isoelectric Point: 6.6449

>NTDB_id=1029178 STACADC2_RS06600 WP_087010070.1 1241368..1242054(-) (radC) [Streptococcus thermophilus strain ACA-DC]
MYSIVAEESGLLPRERLLQKGAEVLSDQELLAIVLRTGTKSESVLSMANRILKGMTSLADLSRLSLNELQEITGIGRVKS
IELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILY
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1029178 STACADC2_RS06600 WP_087010070.1 1241368..1242054(-) (radC) [Streptococcus thermophilus strain ACA-DC]
ATGTATAGTATTGTAGCTGAGGAGTCGGGGCTTTTGCCTCGTGAGCGTCTCTTACAAAAGGGTGCAGAGGTCTTATCTGA
CCAGGAATTGTTGGCGATAGTGCTGCGGACGGGGACTAAGTCTGAGTCGGTTCTATCTATGGCCAATCGTATTTTGAAAG
GGATGACGAGTTTGGCGGATTTGTCTCGCTTGTCTCTGAATGAGCTTCAGGAGATTACTGGTATTGGGCGTGTGAAATCC
ATTGAGCTGAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCTGAGTTGGCTCGTTCTGAGCAGATTATGTCTAG
TCAGCAGGTGGCACGTCGCATGATGTTAGATATTGGTGACAAGCCTCAGGAGCATCTGGTGGCCATCTACCTTGATACGC
AGAATCGTATTATTCAGCAAAAGACGGTCTTTATTGGTGGGGTTCGCCGTTCGATTGCCGAGCCGCGTGAGATTTTGTAT
TATGCTTGTCATCTGATGGCAACTTCCTTGATTGTGGTCCACAATCATCCTTCGGGGGAAGCCTATCCTAGTCGCAATGA
TATTGATTTTACTCAAAAGATTAAGAGGTCCTGTGACGACTTGGGAATTTGTCTTCTTGACCATCTGATTGTTGGAAAAT
CAACTTATTATTCCTTTCGTGAGGAGAGGGAGGATTTTGAACTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(105-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

58.482

98.246

0.575
  radC Streptococcus pneumoniae R6

58.036

98.246

0.57
  radC Streptococcus pneumoniae D39

58.036

98.246

0.57
  radC Streptococcus gordonii str. Challis substr. CH1

57.658

97.368

0.561
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.642

92.982

0.443