Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AACH75_RS02375 Genome accession   NZ_AP027933
Coordinates   490146..490733 (-) Length   195 a.a.
NCBI ID   WP_335812120.1    Uniprot ID   -
Organism   Aeromonas veronii strain VA7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 485146..495733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH75_RS02350 (VAWG002_04550) cspA 486466..486678 (-) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -
  AACH75_RS02355 (VAWG002_04560) yjbD 487274..487558 (-) 285 WP_005340165.1 DUF3811 domain-containing protein -
  AACH75_RS02360 (VAWG002_04570) - 487705..488607 (-) 903 WP_338773597.1 cation diffusion facilitator family transporter -
  AACH75_RS02365 (VAWG002_04580) - 489068..489193 (+) 126 WP_019445191.1 hypothetical protein -
  AACH75_RS02370 (VAWG002_04590) - 489266..490009 (-) 744 WP_026034915.1 transporter substrate-binding domain-containing protein -
  AACH75_RS02375 (VAWG002_04600) ssb 490146..490733 (-) 588 WP_335812120.1 single-stranded DNA-binding protein Machinery gene
  AACH75_RS02380 (VAWG002_04610) - 491160..491807 (+) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  AACH75_RS02385 (VAWG002_04620) - 491807..492250 (+) 444 WP_100652617.1 curli production assembly/transport protein CsgE -
  AACH75_RS02390 (VAWG002_04630) - 492262..492663 (+) 402 WP_019445195.1 curli assembly protein CsgF -
  AACH75_RS02395 (VAWG002_04640) - 492671..493510 (+) 840 WP_338773599.1 CsgG/HfaB family protein -
  AACH75_RS02400 (VAWG002_04650) - 493697..494218 (+) 522 WP_338773601.1 curlin -
  AACH75_RS02405 (VAWG002_04660) - 494253..495704 (+) 1452 WP_042080926.1 curlin -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21552.10 Da        Isoelectric Point: 5.9301

>NTDB_id=102907 AACH75_RS02375 WP_335812120.1 490146..490733(-) (ssb) [Aeromonas veronii strain VA7]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQPRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=102907 AACH75_RS02375 WP_335812120.1 490146..490733(-) (ssb) [Aeromonas veronii strain VA7]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAAGTCTATGTC
GAAGGTAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCCGCGCCCGGCACCGGCACCACAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCACCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.114

98.974

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456

Multiple sequence alignment