Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AACH72_RS12410 Genome accession   NZ_AP027931
Coordinates   2732775..2733350 (+) Length   191 a.a.
NCBI ID   WP_005306061.1    Uniprot ID   K1JJU3
Organism   Aeromonas dhakensis strain VA6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2727775..2738350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH72_RS12400 (VAWG001_24140) uvrA 2728675..2731503 (-) 2829 WP_213344411.1 excinuclease ABC subunit UvrA -
  AACH72_RS12405 (VAWG001_24150) - 2731599..2732258 (-) 660 WP_338714423.1 LuxR C-terminal-related transcriptional regulator -
  AACH72_RS12410 (VAWG001_24160) ssb 2732775..2733350 (+) 576 WP_005306061.1 single-stranded DNA-binding protein Machinery gene
  AACH72_RS12415 (VAWG001_24170) - 2733513..2734805 (+) 1293 WP_331401578.1 site-specific integrase -
  AACH72_RS12420 (VAWG001_24180) - 2734854..2736479 (+) 1626 WP_202016971.1 site-specific integrase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21162.54 Da        Isoelectric Point: 5.9247

>NTDB_id=102891 AACH72_RS12410 WP_005306061.1 2732775..2733350(+) (ssb) [Aeromonas dhakensis strain VA6]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDGFSGVMQMLGGRPQGAGQGMGGQSQGNWGQPQQGMQSQQPMNQSRPAPQQNMQQQ
QGGYSRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=102891 AACH72_RS12410 WP_005306061.1 2732775..2733350(+) (ssb) [Aeromonas dhakensis strain VA6]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACCAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCAGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTG
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGCGGCCAGGAGCGTTACACCACCGAAGTACTGGTCGATGGTTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGCCGGTCAGGGCATGGGCGGTCAGTCCCAAGGCAACTGGG
GTCAGCCGCAACAGGGCATGCAGTCCCAGCAGCCGATGAACCAGTCCCGCCCGGCTCCGCAGCAGAACATGCAGCAACAG
CAAGGTGGTTATAGCCGTCCGGCCCAGCAGCCGCAATCCGCTCCGCCGGTATACAACGAGCCGCCGATGGATTTCGACGA
CGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K1JJU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.388

100

0.712
  ssb Glaesserella parasuis strain SC1401

52.381

98.953

0.518
  ssb Neisseria gonorrhoeae MS11

47.059

97.906

0.461
  ssb Neisseria meningitidis MC58

45.699

97.382

0.445

Multiple sequence alignment