Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   LLA12_RS08660 Genome accession   NZ_LT599049
Coordinates   1810150..1811148 (-) Length   332 a.a.
NCBI ID   WP_021722108.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain A12     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1805150..1816148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLA12_RS08640 (LLA12_01847) trxA 1805541..1805855 (-) 315 WP_003129442.1 thioredoxin -
  LLA12_RS08645 (LLA12_01848) mutS/mutS2 1805952..1808282 (-) 2331 WP_021722107.1 endonuclease MutS2 Machinery gene
  LLA12_RS08650 (LLA12_01849) - 1808327..1808887 (-) 561 WP_003129445.1 CvpA family protein -
  LLA12_RS08655 (LLA12_01850) - 1809046..1810011 (-) 966 WP_003129446.1 NAD(P)/FAD-dependent oxidoreductase -
  LLA12_RS08660 (LLA12_01851) ccpA 1810150..1811148 (-) 999 WP_021722108.1 catabolite control protein A Regulator
  LLA12_RS08665 (LLA12_01852) - 1811363..1812451 (+) 1089 WP_021722109.1 M24 family metallopeptidase -
  LLA12_RS08670 (LLA12_01853) - 1812763..1814763 (-) 2001 WP_021722110.1 cell division site-positioning protein MapZ family protein -
  LLA12_RS08675 (LLA12_01854) - 1814910..1816064 (-) 1155 WP_021722111.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36595.72 Da        Isoelectric Point: 4.9172

>NTDB_id=1028895 LLA12_RS08660 WP_021722108.1 1810150..1811148(-) (ccpA) [Lactococcus lactis subsp. lactis strain A12]
MVESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAVARGLASKHTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLIKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=1028895 LLA12_RS08660 WP_021722108.1 1810150..1811148(-) (ccpA) [Lactococcus lactis subsp. lactis strain A12]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACCGTTAGTCGTGTTGTAAA
TGGAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGAAGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGCGGACTCGCAAGTAAACATACAACAACAGTTGGTGTTATCTTGCCAACCATCACTTCAACTTACTTCGCAGCG
ATTACTCGCGGGGTTGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGACGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACTTCCCTCAAAAATTCAAGAACACCTGTCGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAATTGATTGATAGTGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTGAAAGACGTTGAAAATACAGAACGTATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATATTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGAAAAGCACTTGCTGAACGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTGTCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTAACTTCTGTTAACCAACCCC
TTTACGATTTGGGAGCAGTAGCAATGCGTCTTTTGATAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGTCGTTCTACCAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-331)

Bacterial regulatory proteins, lacI family (LacI)

(7-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

99.398

100

0.994
  ccpA Streptococcus pneumoniae D39

57.1

99.699

0.569
  ccpA Streptococcus gordonii str. Challis substr. CH1

56.798

99.699

0.566