Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LLA12_RS05350 Genome accession   NZ_LT599049
Coordinates   1108712..1109392 (+) Length   226 a.a.
NCBI ID   WP_021722532.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain A12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1103712..1114392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLA12_RS05330 (LLA12_01128) - 1104076..1104591 (+) 516 WP_003131889.1 DUF2127 domain-containing protein -
  LLA12_RS05335 (LLA12_01129) - 1104595..1105920 (+) 1326 WP_021722534.1 sensor histidine kinase -
  LLA12_RS05340 (LLA12_01130) - 1105927..1106583 (+) 657 WP_021722533.1 phosphatase PAP2 family protein -
  LLA12_RS05345 (LLA12_01131) glmS 1106764..1108581 (+) 1818 WP_010905678.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  LLA12_RS05350 (LLA12_01132) radC 1108712..1109392 (+) 681 WP_021722532.1 RadC family protein Machinery gene
  LLA12_RS05355 (LLA12_01133) - 1109480..1110130 (-) 651 WP_021464703.1 redox-sensing transcriptional repressor Rex -
  LLA12_RS05360 (LLA12_01134) - 1110355..1110747 (+) 393 WP_021722531.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  LLA12_RS05365 (LLA12_01135) - 1110925..1112832 (+) 1908 WP_021722530.1 ABC-F family ATP-binding cassette domain-containing protein -
  LLA12_RS05370 (LLA12_01136) - 1113006..1113863 (+) 858 WP_012897688.1 XRE/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25871.68 Da        Isoelectric Point: 7.4317

>NTDB_id=1028879 LLA12_RS05350 WP_021722532.1 1108712..1109392(+) (radC) [Lactococcus lactis subsp. lactis strain A12]
MYELRENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLRPSQADKIFTDKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1028879 LLA12_RS05350 WP_021722532.1 1108712..1109392(+) (radC) [Lactococcus lactis subsp. lactis strain A12]
ATGTATGAACTAAGAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAGAGAGTATGGCCTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTACGACCCAGTCAGGCTGA
TAAAATATTTACTGACAAAATAAAAAAATCTTGTGAGGATGTGGGGATCAATTTTATTGACCATATTATTGTAGGGGCTG
GTAATTATTTTAGTTTTCGGGAAGAAGAGATCAGAAAATGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-80)

RadC-like JAB domain (RadC)

(115-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

45.946

98.23

0.451
  radC Streptococcus pneumoniae R6

45.946

98.23

0.451
  radC Streptococcus pneumoniae D39

45.946

98.23

0.451
  radC Streptococcus gordonii str. Challis substr. CH1

45.495

98.23

0.447
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40.09

98.23

0.394