Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB4O90_RS16235 Genome accession   NZ_CP163033
Coordinates   3276302..3276898 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain W162     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3271302..3281898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4O90_RS16220 (AB4O90_16220) helD 3271510..3273564 (-) 2055 WP_009485779.1 DNA helicase IV -
  AB4O90_RS16225 (AB4O90_16225) - 3273689..3274135 (+) 447 WP_002898425.1 YccF domain-containing protein -
  AB4O90_RS16230 (AB4O90_16230) yccS 3274153..3276288 (+) 2136 WP_002898422.1 YccS family putative transporter -
  AB4O90_RS16235 (AB4O90_16235) sxy/tfoX 3276302..3276898 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  AB4O90_RS16240 (AB4O90_16240) sulA 3277247..3277756 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  AB4O90_RS16245 (AB4O90_16245) ompA 3278109..3279179 (+) 1071 WP_002898408.1 porin OmpA -
  AB4O90_RS16250 (AB4O90_16250) matP 3279311..3279763 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AB4O90_RS16255 (AB4O90_16255) - 3279949..3281706 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1028544 AB4O90_RS16235 WP_004179217.1 3276302..3276898(-) (sxy/tfoX) [Klebsiella pneumoniae strain W162]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1028544 AB4O90_RS16235 WP_004179217.1 3276302..3276898(-) (sxy/tfoX) [Klebsiella pneumoniae strain W162]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment