Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AB4922_RS11210 Genome accession   NZ_CP162911
Coordinates   2189051..2189344 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus aerius strain KW1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2184051..2194344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4922_RS11160 (AB4922_11160) sinR 2184215..2184550 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  AB4922_RS11165 (AB4922_11165) tasA 2184618..2185418 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  AB4922_RS11170 (AB4922_11170) sipW 2185477..2186049 (-) 573 WP_017357979.1 signal peptidase I SipW -
  AB4922_RS11175 (AB4922_11175) tapA 2186099..2186626 (-) 528 WP_019743006.1 amyloid fiber anchoring/assembly protein TapA -
  AB4922_RS11180 (AB4922_11180) - 2186879..2187205 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  AB4922_RS11185 (AB4922_11185) - 2187240..2187434 (-) 195 WP_008342191.1 YqzE family protein -
  AB4922_RS11190 (AB4922_11190) comGG 2187495..2187878 (-) 384 WP_113747189.1 competence type IV pilus minor pilin ComGG -
  AB4922_RS11195 (AB4922_11195) comGF 2187875..2188372 (-) 498 WP_113747188.1 competence type IV pilus minor pilin ComGF -
  AB4922_RS11200 (AB4922_11200) comGE 2188314..2188628 (-) 315 WP_368774525.1 competence type IV pilus minor pilin ComGE -
  AB4922_RS11205 (AB4922_11205) comGD 2188612..2189058 (-) 447 WP_035702770.1 competence type IV pilus minor pilin ComGD -
  AB4922_RS11210 (AB4922_11210) comGC 2189051..2189344 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  AB4922_RS11215 (AB4922_11215) comGB 2189362..2190402 (-) 1041 WP_035390815.1 competence type IV pilus assembly protein ComGB -
  AB4922_RS11220 (AB4922_11220) comGA 2190383..2191453 (-) 1071 WP_368774526.1 competence type IV pilus ATPase ComGA Machinery gene
  AB4922_RS11225 (AB4922_11225) - 2191911..2192780 (-) 870 WP_007501231.1 STAS domain-containing protein -
  AB4922_RS11235 (AB4922_11235) - 2193006..2193386 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AB4922_RS11240 (AB4922_11240) - 2193599..2193841 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=1028034 AB4922_RS11210 WP_008342186.1 2189051..2189344(-) (comGC) [Bacillus aerius strain KW1]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1028034 AB4922_RS11210 WP_008342186.1 2189051..2189344(-) (comGC) [Bacillus aerius strain KW1]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGATGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAATGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment