Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB4922_RS11160 Genome accession   NZ_CP162911
Coordinates   2184215..2184550 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus aerius strain KW1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2179215..2189550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4922_RS11140 (AB4922_11140) gcvT 2179691..2180788 (-) 1098 WP_165378915.1 glycine cleavage system aminomethyltransferase GcvT -
  AB4922_RS11145 (AB4922_11145) - 2181350..2183020 (+) 1671 WP_342493017.1 SNF2-related protein -
  AB4922_RS11150 (AB4922_11150) - 2183035..2183832 (+) 798 WP_366963541.1 YqhG family protein -
  AB4922_RS11155 (AB4922_11155) - 2184017..2184181 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  AB4922_RS11160 (AB4922_11160) sinR 2184215..2184550 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  AB4922_RS11165 (AB4922_11165) tasA 2184618..2185418 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  AB4922_RS11170 (AB4922_11170) sipW 2185477..2186049 (-) 573 WP_017357979.1 signal peptidase I SipW -
  AB4922_RS11175 (AB4922_11175) tapA 2186099..2186626 (-) 528 WP_019743006.1 amyloid fiber anchoring/assembly protein TapA -
  AB4922_RS11180 (AB4922_11180) - 2186879..2187205 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  AB4922_RS11185 (AB4922_11185) - 2187240..2187434 (-) 195 WP_008342191.1 YqzE family protein -
  AB4922_RS11190 (AB4922_11190) comGG 2187495..2187878 (-) 384 WP_113747189.1 competence type IV pilus minor pilin ComGG -
  AB4922_RS11195 (AB4922_11195) comGF 2187875..2188372 (-) 498 WP_113747188.1 competence type IV pilus minor pilin ComGF -
  AB4922_RS11200 (AB4922_11200) comGE 2188314..2188628 (-) 315 WP_368774525.1 competence type IV pilus minor pilin ComGE -
  AB4922_RS11205 (AB4922_11205) comGD 2188612..2189058 (-) 447 WP_035702770.1 competence type IV pilus minor pilin ComGD -
  AB4922_RS11210 (AB4922_11210) comGC 2189051..2189344 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=1028033 AB4922_RS11160 WP_017357978.1 2184215..2184550(+) (sinR) [Bacillus aerius strain KW1]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1028033 AB4922_RS11160 WP_017357978.1 2184215..2184550(+) (sinR) [Bacillus aerius strain KW1]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment