Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AB4L27_RS07860 | Genome accession | NZ_CP162907 |
| Coordinates | 1684189..1684782 (-) | Length | 197 a.a. |
| NCBI ID | WP_012841351.1 | Uniprot ID | A0AAE4SAG9 |
| Organism | Vibrio diabolicus strain 3098 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1679189..1689782
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4L27_RS07840 (AB4L27_07840) | aroB | 1680072..1681171 (-) | 1100 | Protein_1516 | 3-dehydroquinate synthase | - |
| AB4L27_RS07845 (AB4L27_07845) | aroK | 1681204..1681722 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| AB4L27_RS07850 (AB4L27_07850) | pilQ | 1681910..1683658 (-) | 1749 | WP_006742777.1 | type IV pilus secretin PilQ | Machinery gene |
| AB4L27_RS07855 (AB4L27_07855) | pilP | 1683684..1684199 (-) | 516 | WP_237312731.1 | pilus assembly protein PilP | Machinery gene |
| AB4L27_RS07860 (AB4L27_07860) | pilO | 1684189..1684782 (-) | 594 | WP_012841351.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AB4L27_RS07865 (AB4L27_07865) | pilN | 1684775..1685350 (-) | 576 | WP_046874634.1 | PilN domain-containing protein | Machinery gene |
| AB4L27_RS07870 (AB4L27_07870) | pilM | 1685334..1686350 (-) | 1017 | WP_005395718.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| AB4L27_RS07875 (AB4L27_07875) | - | 1686494..1689055 (+) | 2562 | WP_256935792.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23042.45 Da Isoelectric Point: 4.7906
>NTDB_id=1027975 AB4L27_RS07860 WP_012841351.1 1684189..1684782(-) (pilO) [Vibrio diabolicus strain 3098]
MVDWQDLEIDEMAEWPLLPQLVVIALLIFLIQGFGYWFYLKPKEEQLNNLVQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETNNDK
MVDWQDLEIDEMAEWPLLPQLVVIALLIFLIQGFGYWFYLKPKEEQLNNLVQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETNNDK
Nucleotide
Download Length: 594 bp
>NTDB_id=1027975 AB4L27_RS07860 WP_012841351.1 1684189..1684782(-) (pilO) [Vibrio diabolicus strain 3098]
ATGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCAGAGTGGCCATTGTTGCCTCAGCTTGTGGTTATCGCGCTGCT
GATTTTCCTCATTCAAGGTTTTGGCTATTGGTTTTACCTTAAGCCAAAAGAAGAGCAATTGAATAACTTGGTCCAGCAGG
AGCAGACGCTCAAGGTGGCACTGAAGATTAAAGCGAACAAAGTAGCTGCATTGCCTCAGCTTCAATCTCAATTGGATGAA
CTCACCACGCGTTACGAGTTATTGCTACAACAACTGCCCGCGCAAAAAGAGTTGGCTACGATGCTCGCTTCGGTGAATGA
ACTCGGTATCGACAATAAGTTGACCTTTACCCGTATCGACTGGGGTGAAAAGCAATCAGAGCATTTCCTCTATCGTCTTC
CTTTAAACATTGAGTTAACGGGAGATTTTCATGACATCGGACATTTTTCTCAGGCGATAGCAACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAAAGTGAAACTCTGCACTTTAGGGTACGAGCCAATACCTATCA
GTTTAAGCCAGAGGAGACGAACAATGACAAGTAA
ATGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCAGAGTGGCCATTGTTGCCTCAGCTTGTGGTTATCGCGCTGCT
GATTTTCCTCATTCAAGGTTTTGGCTATTGGTTTTACCTTAAGCCAAAAGAAGAGCAATTGAATAACTTGGTCCAGCAGG
AGCAGACGCTCAAGGTGGCACTGAAGATTAAAGCGAACAAAGTAGCTGCATTGCCTCAGCTTCAATCTCAATTGGATGAA
CTCACCACGCGTTACGAGTTATTGCTACAACAACTGCCCGCGCAAAAAGAGTTGGCTACGATGCTCGCTTCGGTGAATGA
ACTCGGTATCGACAATAAGTTGACCTTTACCCGTATCGACTGGGGTGAAAAGCAATCAGAGCATTTCCTCTATCGTCTTC
CTTTAAACATTGAGTTAACGGGAGATTTTCATGACATCGGACATTTTTCTCAGGCGATAGCAACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAAAGTGAAACTCTGCACTTTAGGGTACGAGCCAATACCTATCA
GTTTAAGCCAGAGGAGACGAACAATGACAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
88.947 |
96.447 |
0.858 |
| pilO | Vibrio cholerae strain A1552 |
70.051 |
100 |
0.701 |