Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AB4L27_RS07865 Genome accession   NZ_CP162907
Coordinates   1684775..1685350 (-) Length   191 a.a.
NCBI ID   WP_046874634.1    Uniprot ID   -
Organism   Vibrio diabolicus strain 3098     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1679775..1690350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4L27_RS07840 (AB4L27_07840) aroB 1680072..1681171 (-) 1100 Protein_1516 3-dehydroquinate synthase -
  AB4L27_RS07845 (AB4L27_07845) aroK 1681204..1681722 (-) 519 WP_005381319.1 shikimate kinase AroK -
  AB4L27_RS07850 (AB4L27_07850) pilQ 1681910..1683658 (-) 1749 WP_006742777.1 type IV pilus secretin PilQ Machinery gene
  AB4L27_RS07855 (AB4L27_07855) pilP 1683684..1684199 (-) 516 WP_237312731.1 pilus assembly protein PilP Machinery gene
  AB4L27_RS07860 (AB4L27_07860) pilO 1684189..1684782 (-) 594 WP_012841351.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB4L27_RS07865 (AB4L27_07865) pilN 1684775..1685350 (-) 576 WP_046874634.1 PilN domain-containing protein Machinery gene
  AB4L27_RS07870 (AB4L27_07870) pilM 1685334..1686350 (-) 1017 WP_005395718.1 type IV pilus biogenesis protein PilM Machinery gene
  AB4L27_RS07875 (AB4L27_07875) - 1686494..1689055 (+) 2562 WP_256935792.1 penicillin-binding protein 1A -
  AB4L27_RS07880 (AB4L27_07880) oxyR 1689107..1690018 (-) 912 WP_005395720.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22353.85 Da        Isoelectric Point: 7.0774

>NTDB_id=1027976 AB4L27_RS07865 WP_046874634.1 1684775..1685350(-) (pilN) [Vibrio diabolicus strain 3098]
MLYRINLLPWRENQREEHRRRFISLVALGMLVAIGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVPEKKVEAQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1027976 AB4L27_RS07865 WP_046874634.1 1684775..1685350(-) (pilN) [Vibrio diabolicus strain 3098]
GTGCTTTATCGCATTAATTTACTTCCTTGGAGAGAGAACCAAAGAGAAGAGCACCGACGTCGTTTCATTAGCTTGGTCGC
GTTAGGCATGTTGGTTGCCATTGGTATTCAATGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAGCAGCAGGAGC
GGCTTGATTACCTTACTCACTACATTGCTGAGCTCGACCAGCGTATTGAAGCAATGAAAATCGCCGAGCAAGAGCACAGC
AAAATCCTCGAACGTTTAAAAGTGGTTGAAGGGTTACAAAACGGTCGAAACAAAACGACCGAGTTTATGAACTTGATGCC
AGCCGTCATTCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGTTGGACAACATGGAGCGTTCGGCCAAGTTGAATGATGTAGAAATGCACTCCATCGTT
CACGGAAAAGCGCGTTTTGGAAAAGAGTTCCAAACGTTCAAAGTGTCTTTCATGTTCAAAGTGCCGGAGAAGAAAGTGGA
GGCCCAGCATGGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.246

100

0.832
  pilN Vibrio cholerae strain A1552

60.106

98.429

0.592

Multiple sequence alignment