Detailed information NTG1027824

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: LF925_RS17120
• Genome accession: NZ_CP162669
• Coordinates: 3837186..3837734 (+)
• Length: 182 a.a.
• NCBI ID: WP_012886084.1
• Uniprot ID: D2BVZ8
• Organism: Dickeya zeae strain A661-S21-A17
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	3837186..3847557	3837186..3837734	within	0

Gene organization within MGE regions

Location: 3837186..3847557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LF925_RS17120 (LF925_017120)	ssb	3837186..3837734 (+)	549	WP_012886084.1	single-stranded DNA-binding protein	Machinery gene
LF925_RS17125 (LF925_017125)	-	3837821..3838399 (-)	579	WP_226067435.1	flavin reductase family protein	-
LF925_RS17130 (LF925_017130)	-	3838442..3839071 (-)	630	WP_226067434.1	NAD-dependent dehydratase	-
LF925_RS17135 (LF925_017135)	-	3839492..3840073 (+)	582	WP_102802323.1	DUF4255 domain-containing protein	-
LF925_RS17140 (LF925_017140)	-	3840070..3840879 (+)	810	WP_226067433.1	hypothetical protein	-
LF925_RS17145 (LF925_017145)	-	3841017..3842570 (+)	1554	WP_226067432.1	phage tail sheath C-terminal domain-containing protein	-
LF925_RS17150 (LF925_017150)	-	3842632..3843102 (+)	471	WP_226067430.1	phage tail protein	-
LF925_RS17155 (LF925_017155)	-	3843209..3843667 (+)	459	WP_023640712.1	phage tail protein	-
LF925_RS17160 (LF925_017160)	-	3843688..3843888 (+)	201	WP_226067428.1	hypothetical protein	-
LF925_RS17165 (LF925_017165)	-	3843903..3844550 (+)	648	WP_023640714.1	hypothetical protein	-
LF925_RS17170 (LF925_017170)	vgrG	3844563..3846353 (+)	1791	WP_226067426.1	type VI secretion system tip protein VgrG	-
LF925_RS17175 (LF925_017175)	-	3846836..3847135 (+)	300	WP_016940542.1	PAAR domain-containing protein	-
LF925_RS17180 (LF925_017180)	-	3847138..3847557 (+)	420	WP_226067424.1	GPW/gp25 family protein	-

Sequence

Protein

• Length: 182 a.a.
• Molecular weight: 19464.46 Da
• Isoelectric Point: 5.2440

>NTDB_id=1027824 LF925_RS17120 WP_012886084.1 3837186..3837734(+) (ssb) [Dickeya zeae strain A661-S21-A17]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGNMGGNTGGGNAPQGGWGQPQQPQQANQFSGGGQSR
PQQSAPMPGNEPPMDFDDDIPF

Nucleotide

• Length: 549 bp

>NTDB_id=1027824 LF925_RS17120 WP_012886084.1 3837186..3837734(+) (ssb) [Dickeya zeae strain A661-S21-A17]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACAG
AGTGGCACCGCGTCGCCCTCTACGGCAAGCTGGCGGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAGTTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGTACCGGCGGCGGTGCACCTGCTGGTGGCAACATGGGCGGCAATACAGGTGGTG
GTAACGCACCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGCCAGTCACGT
CCTCAGCAAAGCGCCCCAATGCCGGGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

3D structure

• AlphaFold DB: D2BVZ8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	73.656	100	0.753
ssb	Glaesserella parasuis strain SC1401	55.319	100	0.571
ssb	Neisseria meningitidis MC58	45.263	100	0.473
ssb	Neisseria gonorrhoeae MS11	45.263	100	0.473