Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LF925_RS02725 Genome accession   NZ_CP162669
Coordinates   597732..598268 (+) Length   178 a.a.
NCBI ID   WP_226066804.1    Uniprot ID   -
Organism   Dickeya zeae strain A661-S21-A17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 592732..603268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF925_RS02705 (LF925_002705) - 593353..594129 (+) 777 WP_226066808.1 PFL_4669 family integrating conjugative element protein -
  LF925_RS02710 (LF925_002710) - 594126..596177 (+) 2052 WP_226066807.1 DNA topoisomerase III -
  LF925_RS02715 (LF925_002715) - 596865..597344 (+) 480 WP_226066806.1 STY4534 family ICE replication protein -
  LF925_RS02720 (LF925_002720) - 597424..597654 (+) 231 WP_038903514.1 hypothetical protein -
  LF925_RS02725 (LF925_002725) ssb 597732..598268 (+) 537 WP_226066804.1 single-stranded DNA-binding protein Machinery gene
  LF925_RS02730 (LF925_002730) - 598293..598907 (+) 615 WP_226066802.1 hypothetical protein -
  LF925_RS02735 (LF925_002735) - 599050..599481 (+) 432 WP_024108354.1 DUF29 domain-containing protein -
  LF925_RS02740 (LF925_002740) - 599621..600847 (+) 1227 WP_226066800.1 TcpQ domain-containing protein -
  LF925_RS02745 (LF925_002745) pilM 600816..601286 (+) 471 WP_226066799.1 type IV pilus biogenesis protein PilM -
  LF925_RS02750 (LF925_002750) - 601297..602985 (+) 1689 WP_226066798.1 PilN family type IVB pilus formation outer membrane protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19370.67 Da        Isoelectric Point: 5.7571

>NTDB_id=1027812 LF925_RS02725 WP_226066804.1 597732..598268(+) (ssb) [Dickeya zeae strain A661-S21-A17]
MSARGVNKVTLIGFLGQDPEVRYMPNGTAVTGIQVATSESWRDKQSGQEKERTEWHRVVMFGKLAEIAGEYLRKGSQVYI
DGQLRTRKWQDNNGVDRWTTEVVVTQQGTMQMLGKANNGGSSGNPNAGWGQPQQPAAPAMSGTPAQSMGNEPPMDFDDDI
PFASLGLAMPNHALYAIS

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1027812 LF925_RS02725 WP_226066804.1 597732..598268(+) (ssb) [Dickeya zeae strain A661-S21-A17]
ATGTCTGCACGCGGTGTTAACAAAGTTACTCTGATTGGTTTTCTGGGGCAGGATCCAGAAGTCCGTTATATGCCGAACGG
TACTGCTGTGACTGGAATTCAGGTTGCAACGTCAGAATCTTGGCGTGACAAGCAGTCTGGCCAGGAAAAGGAGCGTACTG
AATGGCACAGGGTAGTAATGTTCGGCAAACTGGCGGAAATCGCTGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GACGGCCAATTGCGTACACGAAAATGGCAGGACAATAATGGCGTTGATCGCTGGACAACCGAAGTAGTCGTCACTCAGCA
GGGCACAATGCAAATGCTGGGTAAAGCTAACAACGGTGGTAGCAGTGGTAACCCGAATGCAGGTTGGGGGCAACCTCAAC
AGCCTGCAGCACCGGCAATGAGCGGAACGCCAGCTCAATCCATGGGGAATGAACCCCCGATGGATTTTGATGACGACATA
CCGTTCGCCAGCCTCGGCCTGGCAATGCCAAATCATGCGCTTTATGCCATTTCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

63.277

99.438

0.629
  ssb Glaesserella parasuis strain SC1401

50.276

100

0.511
  ssb Neisseria gonorrhoeae MS11

43.889

100

0.444
  ssb Neisseria meningitidis MC58

43.889

100

0.444

Multiple sequence alignment