Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   AW03_RS13560 Genome accession   NZ_CP007173
Coordinates   2623986..2624681 (-) Length   231 a.a.
NCBI ID   WP_015384272.1    Uniprot ID   -
Organism   Bacillus subtilis HJ5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2618986..2629681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS13535 (AW03_026130) minD 2619922..2620728 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  AW03_RS13540 (AW03_026140) minC 2620730..2621410 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  AW03_RS13545 (AW03_026150) mreD 2621463..2621981 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  AW03_RS13550 (AW03_026160) mreC 2621978..2622850 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  AW03_RS13555 (AW03_026170) mreB 2622881..2623894 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  AW03_RS13560 (AW03_026190) ysxA/radC 2623986..2624681 (-) 696 WP_015384272.1 DNA repair protein RadC Machinery gene
  AW03_RS13565 (AW03_026200) maf 2624718..2625287 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  AW03_RS13570 (AW03_026210) spoIIB 2625440..2626438 (-) 999 WP_015384273.1 stage II sporulation protein SpoIIB -
  AW03_RS13575 (AW03_026220) comC 2626572..2627318 (-) 747 WP_015384274.1 A24 family peptidase Machinery gene
  AW03_RS13580 (AW03_026230) folC 2627458..2628750 (-) 1293 WP_015384275.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26142.47 Da        Isoelectric Point: 7.9285

>NTDB_id=102781 AW03_RS13560 WP_015384272.1 2623986..2624681(-) (ysxA/radC) [Bacillus subtilis HJ5]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTIFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=102781 AW03_RS13560 WP_015384272.1 2623986..2624681(-) (ysxA/radC) [Bacillus subtilis HJ5]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTTCTGAAAGTCGG
AGCCGAGAACTTAGCGAACCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGATGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCATATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATTTGTGTTCATAATCATCCTTCTGGAGATCC
GACACCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.134

100

0.991
  radC Streptococcus pneumoniae TIGR4

48.571

90.909

0.442
  radC Streptococcus pneumoniae R6

48.095

90.909

0.437
  radC Streptococcus pneumoniae D39

48.095

90.909

0.437
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429

Multiple sequence alignment