Detailed information NTG0102780

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: AW03_RS13400
• Genome accession: NZ_CP007173
• Coordinates: 2598161..2598766 (-)
• Length: 201 a.a.
• NCBI ID: WP_003229717.1
• Uniprot ID: O05392
• Organism: Bacillus subtilis HJ5
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2593161..2603766

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AW03_RS13370 (AW03_025820)	-	2593974..2594363 (+)	390	WP_015483510.1	TIGR04086 family membrane protein	-
AW03_RS13375 (AW03_025830)	yajC	2594420..2594686 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
AW03_RS13380 (AW03_025840)	tgt	2594723..2595868 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
AW03_RS13385 (AW03_025850)	queA	2595895..2596923 (-)	1029	WP_015483511.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
AW03_RS13390 (AW03_025860)	yrzS	2596953..2597153 (-)	201	WP_015384252.1	DUF2905 domain-containing protein	-
AW03_RS13395 (AW03_025870)	ruvB	2597146..2598150 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
AW03_RS13400 (AW03_025880)	ruvA	2598161..2598766 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
AW03_RS13405 (AW03_025890)	bofC	2598905..2599417 (-)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
AW03_RS13410 (AW03_025900)	csbX	2599465..2600772 (-)	1308	WP_015483512.1	MFS transporter	-
AW03_RS13415 (AW03_025910)	iolG	2600843..2601868 (-)	1026	WP_015483513.1	inositol 2-dehydrogenase	-
AW03_RS13420 (AW03_025920)	yrzF	2602106..2602753 (+)	648	WP_015483514.1	phosphotransferase	-
AW03_RS21745 (AW03_025930)	-	2602799..2602921 (-)	123	WP_003229707.1	hypothetical protein	-
AW03_RS21750 (AW03_025940)	-	2603126..2603452 (+)	327	WP_175950709.1	DUF5412 family protein	-
AW03_RS21320	-	2603459..2603599 (+)	141	WP_015483515.1	hypothetical protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22584.08 Da
• Isoelectric Point: 5.4072

>NTDB_id=102780 AW03_RS13400 WP_003229717.1 2598161..2598766(-) (ruvA) [Bacillus subtilis HJ5]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL
EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=102780 AW03_RS13400 WP_003229717.1 2598161..2598766(-) (ruvA) [Bacillus subtilis HJ5]
GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA
GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG
CTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG
AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAGGATGAAGCTTTTTT
GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC
CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT
GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC
AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: O05392

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408