Detailed information
Bioinformatically predicted
Overview
| Name | pilY2 | Type | Machinery gene |
| Locus tag | AB4073_RS02610 | Genome accession | NZ_CP162643 |
| Coordinates | 557512..557994 (+) | Length | 160 a.a. |
| NCBI ID | WP_368678367.1 | Uniprot ID | - |
| Organism | Acinetobacter lactucae strain 128-92 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 552512..562994
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4073_RS02600 (AB4073_02600) | pilX | 552826..553635 (+) | 810 | WP_081172672.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| AB4073_RS02605 (AB4073_02605) | pilY1 | 553647..557501 (+) | 3855 | WP_368678366.1 | PilC/PilY family type IV pilus protein | Machinery gene |
| AB4073_RS02610 (AB4073_02610) | pilY2 | 557512..557994 (+) | 483 | WP_368678367.1 | type IV pilin protein | Machinery gene |
| AB4073_RS02615 (AB4073_02615) | pilE | 557991..558416 (+) | 426 | WP_368678368.1 | type IV pilin protein | Machinery gene |
| AB4073_RS02620 (AB4073_02620) | rpsP | 558564..558815 (+) | 252 | WP_000260334.1 | 30S ribosomal protein S16 | - |
| AB4073_RS02625 (AB4073_02625) | rimM | 558835..559383 (+) | 549 | WP_002116736.1 | ribosome maturation factor RimM | - |
| AB4073_RS02630 (AB4073_02630) | trmD | 559426..560181 (+) | 756 | WP_368678369.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AB4073_RS02635 (AB4073_02635) | rplS | 560401..560769 (+) | 369 | WP_002116654.1 | 50S ribosomal protein L19 | - |
| AB4073_RS02640 (AB4073_02640) | - | 560821..561762 (-) | 942 | WP_368678817.1 | lipase family alpha/beta hydrolase | - |
| AB4073_RS02645 (AB4073_02645) | - | 561878..562909 (-) | 1032 | WP_239956804.1 | lipase secretion chaperone | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17471.81 Da Isoelectric Point: 8.8071
>NTDB_id=1027753 AB4073_RS02610 WP_368678367.1 557512..557994(+) (pilY2) [Acinetobacter lactucae strain 128-92]
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEKLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNINFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEKLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNINFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ
Nucleotide
Download Length: 483 bp
>NTDB_id=1027753 AB4073_RS02610 WP_368678367.1 557512..557994(+) (pilY2) [Acinetobacter lactucae strain 128-92]
ATGAATAAATACTATATTCTGCGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACCGCCTCTGCTGCCAAAGGCGAAATTCTAA
AATTGGCGGAAAAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACATTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCGGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA
ATGAATAAATACTATATTCTGCGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACCGCCTCTGCTGCCAAAGGCGAAATTCTAA
AATTGGCGGAAAAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACATTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCGGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilY2 | Acinetobacter baumannii D1279779 |
93.125 |
100 |
0.931 |
| comE | Acinetobacter baylyi ADP1 |
40.698 |
100 |
0.438 |