Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AB4073_RS02470 Genome accession   NZ_CP162643
Coordinates   525355..525996 (+) Length   213 a.a.
NCBI ID   WP_016143661.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 128-92     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520355..530996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS02450 (AB4073_02450) - 520399..520731 (+) 333 WP_368678353.1 hypothetical protein -
  AB4073_RS02455 (AB4073_02455) - 520734..521558 (+) 825 WP_368678354.1 putative RNA methyltransferase -
  AB4073_RS02460 (AB4073_02460) ponA 521574..524135 (-) 2562 WP_031949514.1 penicillin-binding protein PBP1a -
  AB4073_RS02465 (AB4073_02465) pilM 524297..525355 (+) 1059 WP_016143662.1 pilus assembly protein PilM Machinery gene
  AB4073_RS02470 (AB4073_02470) pilN 525355..525996 (+) 642 WP_016143661.1 PilN domain-containing protein Machinery gene
  AB4073_RS02475 (AB4073_02475) pilO 525993..526772 (+) 780 WP_368678355.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB4073_RS02480 (AB4073_02480) pilP 526784..527311 (+) 528 WP_016143659.1 pilus assembly protein PilP Machinery gene
  AB4073_RS02485 (AB4073_02485) pilQ 527374..529539 (+) 2166 WP_368678356.1 type IV pilus secretin PilQ Machinery gene
  AB4073_RS02490 (AB4073_02490) aroK 529551..530120 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23951.38 Da        Isoelectric Point: 5.4186

>NTDB_id=1027744 AB4073_RS02470 WP_016143661.1 525355..525996(+) (pilN) [Acinetobacter lactucae strain 128-92]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFSGWFYLNQKLSDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1027744 AB4073_RS02470 WP_016143661.1 525355..525996(+) (pilN) [Acinetobacter lactucae strain 128-92]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTCGGGAGCAGCGCAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTTCTGGGTGGTTTTATTTGAATCAAAAACTCAGTGATCAAGAACAAGCGA
ATCAACTCATTATCAGTACAAACCAGAATCTAGATCAACAGCTTAAAACCTTAAATGGCTTGCAAGAACAGCGTGACGCA
ATTATTGAGCGTATGAAGCTCATCCAAGGATTACAAAGTCAGCGTCCAGTCGTTGTACGTTTGGTGGATGAATTGGTACG
CGTGACTCCAGCAGCCATGTATTTGACTAAATTCAGCCGAACTGGAGATAAATTTACCATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCACCATGGTATCGCAACGCTTTTATGAATTCTTTCTTAGCG
ACTGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTCGAGTAGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGAGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGTAGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685

Multiple sequence alignment