Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4073_RS01975 Genome accession   NZ_CP162643
Coordinates   432624..433214 (+) Length   196 a.a.
NCBI ID   WP_016143745.1    Uniprot ID   R8YZN7
Organism   Acinetobacter lactucae strain 128-92     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 427624..438214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS01950 (AB4073_01950) - 427690..428502 (-) 813 WP_368678310.1 SDR family NAD(P)-dependent oxidoreductase -
  AB4073_RS01955 (AB4073_01955) - 428606..428977 (-) 372 WP_216967626.1 MerR family transcriptional regulator -
  AB4073_RS01960 (AB4073_01960) tenA 429042..429716 (-) 675 WP_057106279.1 thiaminase II -
  AB4073_RS01965 (AB4073_01965) - 429979..431052 (+) 1074 WP_081172580.1 DUF475 domain-containing protein -
  AB4073_RS01970 (AB4073_01970) - 431208..432572 (+) 1365 WP_005066887.1 MFS transporter -
  AB4073_RS01975 (AB4073_01975) ssb 432624..433214 (+) 591 WP_016143745.1 single-stranded DNA-binding protein Machinery gene
  AB4073_RS01980 (AB4073_01980) - 433255..433578 (-) 324 WP_239967001.1 AzlD domain-containing protein -
  AB4073_RS01985 (AB4073_01985) - 433575..434270 (-) 696 WP_368678311.1 AzlC family ABC transporter permease -
  AB4073_RS01990 (AB4073_01990) - 434339..434887 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  AB4073_RS01995 (AB4073_01995) - 435193..436635 (+) 1443 WP_061874391.1 amino acid permease -
  AB4073_RS02000 (AB4073_02000) - 436700..438202 (-) 1503 WP_368678312.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21253.03 Da        Isoelectric Point: 6.4822

>NTDB_id=1027742 AB4073_RS01975 WP_016143745.1 432624..433214(+) (ssb) [Acinetobacter lactucae strain 128-92]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGGYGSQ
GGFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1027742 AB4073_RS01975 WP_016143745.1 432624..433214(+) (ssb) [Acinetobacter lactucae strain 128-92]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTATTGCATAACCGTTTAGGGGAAATTGCTCAGCAATTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTATACAACAGAAATCCGTGGCGATCAGATGCAGAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AGGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAGTGGCGGCGGTTATGGTAGCCAA
GGTGGTTTTGGTAATGGTGGAAGCAATCCTCAAGCTGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACC
AGCTGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8YZN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.217

100

0.541
  ssb Vibrio cholerae strain A1552

44.776

100

0.459
  ssb Neisseria meningitidis MC58

39.394

100

0.398
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.383

Multiple sequence alignment