Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4183_RS18045 Genome accession   NZ_CP162620
Coordinates   3842718..3843275 (-) Length   185 a.a.
NCBI ID   WP_115388004.1    Uniprot ID   -
Organism   Pantoea agglomerans strain J22c     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3837718..3848275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4183_RS18025 (AB4183_18025) - 3838822..3839217 (+) 396 WP_003855733.1 transposase -
  AB4183_RS18030 (AB4183_18030) - 3840141..3841100 (-) 960 WP_039392116.1 DMT family transporter -
  AB4183_RS18035 (AB4183_18035) - 3841178..3842005 (-) 828 WP_115388002.1 AraC family transcriptional regulator -
  AB4183_RS18040 (AB4183_18040) - 3842126..3842647 (+) 522 WP_134161755.1 isochorismatase family protein -
  AB4183_RS18045 (AB4183_18045) ssb 3842718..3843275 (-) 558 WP_115388004.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AB4183_RS18050 (AB4183_18050) uvrA 3843513..3846341 (+) 2829 WP_031591782.1 excinuclease ABC subunit UvrA -
  AB4183_RS18055 (AB4183_18055) - 3846575..3847639 (+) 1065 WP_010252184.1 NAD(P)-dependent alcohol dehydrogenase -
  AB4183_RS18060 (AB4183_18060) - 3847692..3848015 (-) 324 WP_031591784.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19683.58 Da        Isoelectric Point: 5.2456

>NTDB_id=1027596 AB4183_RS18045 WP_115388004.1 3842718..3843275(-) (ssb) [Pantoea agglomerans strain J22c]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAGAGAPAGGGAQGGGNNNGWGQPQQPQGNNNQFSGGAQS
RPQPQSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1027596 AB4183_RS18045 WP_115388004.1 3842718..3843275(-) (ssb) [Pantoea agglomerans strain J22c]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTATATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGACAAGCAGACCGGTGAAAACAAAGAGATCACTG
AGTGGCACCGTGTGGTGCTGTTTGGCAAACTGGCTGAAGTCGCGGGTGAATACCTGAAAAAAGGGTCGCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGTAAATGGCAGGATCAGGGTGGCCAGGAGCGTTACACCACAGAAGTCGTGGTTAACGTTGG
CGGTACCATGCAGATGCTGGGCGGCCGTCAGCAGGGCGGTAACGCCGGTGCAGGCGCTCCAGCCGGTGGCGGCGCGCAGG
GCGGTGGCAACAACAATGGCTGGGGTCAGCCGCAGCAGCCGCAGGGCAACAATAACCAGTTCAGTGGCGGCGCGCAGTCC
CGTCCGCAGCCACAGAGCGCGCCGGCCAGCAACAACAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.968

100

0.714
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.584
  ssb Neisseria meningitidis MC58

46.597

100

0.481
  ssb Neisseria gonorrhoeae MS11

46.597

100

0.481

Multiple sequence alignment