Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB0763_RS02615 Genome accession   NZ_CP162601
Coordinates   578268..578822 (+) Length   184 a.a.
NCBI ID   WP_306100999.1    Uniprot ID   A0AB39HC91
Organism   Vibrio sp. HB236076     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 573268..583822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0763_RS02605 (AB0763_02605) uvrA 573943..576774 (-) 2832 WP_306100997.1 excinuclease ABC subunit UvrA -
  AB0763_RS02610 (AB0763_02610) - 577239..577883 (-) 645 WP_306100998.1 response regulator transcription factor -
  AB0763_RS02615 (AB0763_02615) ssb 578268..578822 (+) 555 WP_306100999.1 single-stranded DNA-binding protein Machinery gene
  AB0763_RS02620 (AB0763_02620) - 579790..580440 (+) 651 WP_306101000.1 TetR/AcrR family transcriptional regulator -
  AB0763_RS02625 (AB0763_02625) - 580497..581753 (+) 1257 WP_306101001.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20027.19 Da        Isoelectric Point: 5.2358

>NTDB_id=1027394 AB0763_RS02615 WP_306100999.1 578268..578822(+) (ssb) [Vibrio sp. HB236076]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANLTLATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRQGGGAPMGQGGQPAGGQQGWGQPQQPQYQQPQSSPAPAQSAPK
APQQQPPAQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1027394 AB0763_RS02615 WP_306100999.1 578268..578822(+) (ssb) [Vibrio sp. HB236076]
ATGGCGAGCCGTGGAATTAACAAAGTTATCTTAGTTGGTAATCTAGGTAACGACCCTGAAATCCGTTATATGCCCAGTGG
TGGCGCTGTAGCGAACCTGACTCTTGCAACTTCGGAGTCATGGCGCGATAAAGCGACTGGCGAACAGCGTGAAAAAACCG
AATGGCACCGCGTGGCCTTGTTTGGCAAGTTGGCGGAAGTGGCGGGTGAGTACCTGCGCAAAGGCTCTCAAGTTTACATT
GAAGGGCAATTGCAGACGCGTAAATGGCAAGATCAAAGCGGTCAAGACCGTTACACCACCGAAGTGGTTGTACAAGGCTT
TAACGGTGTGATGCAAATGCTTGGCGGTCGTCAAGGTGGCGGTGCCCCTATGGGTCAAGGCGGCCAACCTGCCGGCGGTC
AACAAGGCTGGGGTCAACCACAACAGCCTCAGTATCAGCAGCCTCAATCTTCTCCAGCGCCAGCACAATCGGCCCCGAAA
GCGCCGCAACAGCAGCCGCCGGCTCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.005

100

0.783
  ssb Glaesserella parasuis strain SC1401

57.368

100

0.592
  ssb Neisseria meningitidis MC58

47.541

99.457

0.473
  ssb Neisseria gonorrhoeae MS11

47.541

99.457

0.473

Multiple sequence alignment