Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AB4P94_RS18955 Genome accession   NZ_CP162592
Coordinates   4104194..4106449 (+) Length   751 a.a.
NCBI ID   WP_395606872.1    Uniprot ID   -
Organism   Pseudomonas sp. B22129     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4099194..4111449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P94_RS18940 (AB4P94_18890) - 4101467..4102195 (+) 729 WP_395606870.1 response regulator transcription factor -
  AB4P94_RS18945 (AB4P94_18895) - 4102182..4103540 (+) 1359 WP_395611360.1 histidine kinase sensor domain-containing protein -
  AB4P94_RS18950 (AB4P94_18900) - 4103543..4104058 (-) 516 WP_395606871.1 DUF2062 domain-containing protein -
  AB4P94_RS18955 (AB4P94_18905) comA 4104194..4106449 (+) 2256 WP_395606872.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB4P94_RS18960 (AB4P94_18910) exbB 4106529..4107164 (+) 636 WP_395606873.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB4P94_RS18965 (AB4P94_18915) - 4107161..4107589 (+) 429 WP_395606874.1 ExbD/TolR family protein -
  AB4P94_RS18970 (AB4P94_18920) lpxK 4107589..4108599 (+) 1011 WP_395606875.1 tetraacyldisaccharide 4'-kinase -
  AB4P94_RS18975 (AB4P94_18925) - 4108624..4108809 (+) 186 WP_003174668.1 Trm112 family protein -
  AB4P94_RS18980 (AB4P94_18930) kdsB 4108806..4109570 (+) 765 WP_395606876.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB4P94_RS18985 (AB4P94_18935) - 4109570..4110034 (+) 465 WP_395606877.1 low molecular weight protein-tyrosine-phosphatase -
  AB4P94_RS18990 (AB4P94_18940) murB 4110031..4111050 (+) 1020 WP_395606878.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 80794.71 Da        Isoelectric Point: 10.9029

>NTDB_id=1027324 AB4P94_RS18955 WP_395606872.1 4104194..4106449(+) (comA) [Pseudomonas sp. B22129]
MRTGMFAFGLGLLSLRFLPALPPTGWLLAMPVMALMLLPWRTYPLAFFLLGLSWACVSAQSALDDRLSPVLDGHTRWVEG
RVVGLPQHTETGTRFELADGRSRHARLPARIRVSWHGGPRVQSGERWRVALTLKRPSGLLNFHGFDYEAWLLSQRIGATA
SVKDGERLAPAGHAWRDPVRQRLMAVNAQGREAAVAALVLGDGSGLAADDWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGLARYGCWPRVLPWLPWACGLAFAAALGYGLLAGFGVPVQRALVMVGLVLLWRLRFRHLGVWLPLLLALNAVLVLEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGPWSVWQVWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTVLLAVPWVGEGLLWLAGGALGWLFSGLALLAGQLPAWVAAEVPLGYWLVSVAGAVLLLLPKGVPFRLLGWPMLLLAI
FPPKEQVPHGQVAVVQLDVGQGQAVILRTRQHTLLYDAGPRSGTVDQGARVVLPALKKLGVGALDMMVLSHAHADHAGGA
VAVARGLPVGRVIGGETEGLPAFLGTQACISGERWAWDGVLFELWQWPGATSSNPKSCVLQVQANGERLLLTGDIDRAAE
QAFIGSPLATRTDWLQAPHHGSRSSSSEAFVQRLAPGAVLISRGRGNAFGHPHPQVMARYQAMGSRVYDSAEHGAVRLQL
GTFRPPEVARSQRRFWREALPLSSVARGQGP

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=1027324 AB4P94_RS18955 WP_395606872.1 4104194..4106449(+) (comA) [Pseudomonas sp. B22129]
ATGAGAACAGGGATGTTCGCGTTCGGACTTGGCTTGCTTTCACTGCGATTTTTACCCGCACTGCCGCCAACCGGCTGGTT
GCTGGCGATGCCGGTCATGGCATTGATGCTGTTGCCTTGGCGTACCTACCCGCTGGCGTTTTTCCTGCTGGGCTTGAGTT
GGGCCTGTGTGAGTGCGCAATCGGCGCTGGATGATCGACTCAGCCCCGTGCTGGACGGGCACACTCGCTGGGTGGAAGGG
CGTGTGGTCGGGTTGCCGCAGCACACGGAGACCGGCACGCGCTTTGAATTGGCCGACGGCCGGTCACGCCACGCTCGATT
GCCGGCGCGCATCCGGGTGTCCTGGCATGGCGGCCCGCGGGTTCAAAGTGGTGAGCGCTGGCGTGTGGCGCTGACCCTCA
AACGGCCATCCGGCTTACTTAACTTTCATGGGTTTGACTATGAAGCCTGGCTGCTCTCGCAACGCATCGGTGCCACGGCC
TCGGTTAAAGATGGCGAGCGCCTGGCGCCCGCCGGGCATGCCTGGCGCGATCCGGTTCGTCAGCGCCTGATGGCGGTGAA
TGCGCAAGGCCGTGAAGCAGCGGTGGCGGCACTGGTGCTGGGCGATGGCTCGGGCCTGGCCGCTGATGACTGGCAAGTCT
TGCAGGACACCGGCACCGTGCACCTGCTGGTTATTTCCGGCCAGCACATCGGGTTGCTGGCGGGGCTGATTTACGCTCTG
GTCGCAGGCTTGGCGCGCTACGGCTGCTGGCCCCGCGTCTTGCCCTGGCTGCCTTGGGCGTGTGGCCTCGCATTTGCTGC
GGCGCTGGGCTACGGGTTGCTGGCCGGGTTTGGCGTACCGGTGCAGCGGGCACTCGTGATGGTCGGGCTGGTGTTGCTCT
GGCGTTTGCGCTTTCGGCACCTGGGTGTATGGCTGCCGCTGTTGCTGGCGCTCAACGCCGTGTTGGTACTGGAACCCTTG
GCCAGTTTGCAGCCGGGGTTCTGGCTGTCGTTCGCGGCAGTGGCGGTGCTGGTGCTGGCCTTCGGCGGGCGCTTGGGGCC
CTGGAGTGTCTGGCAGGTCTGGACCCGGCCACAGTGGCTGATCGCGATTGGCCTGTTTCCGGTTTTACTGGTGCTGGGGT
TGCCGATCAGTCTCAGTGCGCCGGTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGCTGCCATTGGCTTTG
CTGGGGACTGTGTTGCTGGCAGTGCCTTGGGTAGGCGAGGGCCTGTTGTGGCTGGCCGGTGGGGCGCTTGGCTGGCTGTT
CAGCGGGCTGGCGCTTTTGGCCGGGCAATTGCCGGCCTGGGTTGCGGCCGAAGTACCATTGGGTTATTGGCTGGTCAGCG
TGGCGGGTGCGGTGTTATTGCTGCTGCCAAAGGGCGTACCGTTTCGGTTGTTGGGTTGGCCGATGCTGTTGCTCGCCATC
TTCCCTCCCAAGGAGCAGGTTCCCCATGGGCAGGTGGCGGTGGTGCAACTGGATGTTGGCCAGGGCCAGGCAGTGATTTT
GCGTACACGCCAGCATACATTGCTGTACGACGCGGGGCCTCGCTCGGGTACGGTTGACCAAGGCGCGCGGGTGGTATTGC
CAGCGTTGAAAAAACTCGGGGTTGGCGCACTGGACATGATGGTGCTCAGCCATGCCCACGCCGACCATGCCGGTGGCGCA
GTGGCAGTTGCTCGCGGGTTGCCGGTCGGGCGGGTCATCGGCGGGGAAACCGAAGGCTTGCCTGCGTTCCTCGGCACTCA
AGCGTGCATCAGCGGCGAGCGGTGGGCGTGGGATGGTGTGCTCTTTGAGCTGTGGCAATGGCCCGGCGCTACCAGCAGCA
ATCCCAAGTCCTGCGTACTGCAGGTTCAAGCCAATGGCGAACGCCTGCTGCTGACGGGCGACATTGATCGCGCCGCCGAA
CAGGCTTTCATCGGGTCGCCGCTGGCAACCCGCACCGATTGGCTGCAAGCGCCACATCACGGTAGCCGCAGCTCTTCATC
CGAAGCCTTTGTACAACGGCTTGCGCCTGGGGCGGTGTTGATTTCCCGTGGGCGTGGCAATGCATTCGGTCATCCGCACC
CGCAAGTGATGGCGCGTTATCAGGCAATGGGCAGCCGGGTGTACGACAGTGCCGAACACGGCGCGGTGCGCTTGCAATTG
GGCACCTTCCGACCCCCGGAGGTTGCGCGCAGTCAACGGCGTTTCTGGCGCGAGGCGCTGCCTTTGTCCAGCGTCGCCAG
GGGGCAGGGCCCGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.223

95.739

0.577
  comA Ralstonia pseudosolanacearum GMI1000

36.207

100

0.391

Multiple sequence alignment