Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AB4P94_RS18960 Genome accession   NZ_CP162592
Coordinates   4106529..4107164 (+) Length   211 a.a.
NCBI ID   WP_395606873.1    Uniprot ID   -
Organism   Pseudomonas sp. B22129     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4101529..4112164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P94_RS18945 (AB4P94_18895) - 4102182..4103540 (+) 1359 WP_395611360.1 histidine kinase sensor domain-containing protein -
  AB4P94_RS18950 (AB4P94_18900) - 4103543..4104058 (-) 516 WP_395606871.1 DUF2062 domain-containing protein -
  AB4P94_RS18955 (AB4P94_18905) comA 4104194..4106449 (+) 2256 WP_395606872.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB4P94_RS18960 (AB4P94_18910) exbB 4106529..4107164 (+) 636 WP_395606873.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB4P94_RS18965 (AB4P94_18915) - 4107161..4107589 (+) 429 WP_395606874.1 ExbD/TolR family protein -
  AB4P94_RS18970 (AB4P94_18920) lpxK 4107589..4108599 (+) 1011 WP_395606875.1 tetraacyldisaccharide 4'-kinase -
  AB4P94_RS18975 (AB4P94_18925) - 4108624..4108809 (+) 186 WP_003174668.1 Trm112 family protein -
  AB4P94_RS18980 (AB4P94_18930) kdsB 4108806..4109570 (+) 765 WP_395606876.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB4P94_RS18985 (AB4P94_18935) - 4109570..4110034 (+) 465 WP_395606877.1 low molecular weight protein-tyrosine-phosphatase -
  AB4P94_RS18990 (AB4P94_18940) murB 4110031..4111050 (+) 1020 WP_395606878.1 UDP-N-acetylmuramate dehydrogenase -
  AB4P94_RS18995 (AB4P94_18945) - 4111113..4111784 (-) 672 WP_395606879.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23048.20 Da        Isoelectric Point: 7.2806

>NTDB_id=1027325 AB4P94_RS18960 WP_395606873.1 4106529..4107164(+) (exbB) [Pseudomonas sp. B22129]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRITPDYLLGQVWSWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1027325 AB4P94_RS18960 WP_395606873.1 4106529..4107164(+) (exbB) [Pseudomonas sp. B22129]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTTTGGACCCTGCGCGCCAGCCGCATCACGCCTGACTATCTGCTGGGGCAGGTCTGGAGCTGGATCAAGAACA
AGCAGTTGGACAAGCAAAAGCTCAAGGAGCTGCGCGCCAACTCGCCCCTGGGTGAAATCCTTGCCGCGGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAAGAGTGCATTGAAGAGGCTGCCGCCCGGGTCATCCATGAAATGGAGCGCTACAT
CAATGCGCTGGGCACCATCGCCGCCATGGCACCCTTGCTCGGTTTGCTGGGCACTGTGCTGGGTATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCTGTGCTGGCGGGTGGTATCTCCAAGGCGCTGATCACCACGGCG
GCGGGCTTGATGGTCGGTATTCCCTCGGTGTTTTTCCACCGTTTCCTGCAACGTCGCATTGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAATTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGATTTCGTCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839

Multiple sequence alignment