Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4P94_RS09715 Genome accession   NZ_CP162592
Coordinates   2132169..2132696 (+) Length   175 a.a.
NCBI ID   WP_016969466.1    Uniprot ID   A0A0J6H7U2
Organism   Pseudomonas sp. B22129     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2127169..2137696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P94_RS09700 (AB4P94_09680) bfr 2127222..2127686 (+) 465 WP_395610329.1 bacterioferritin -
  AB4P94_RS09705 (AB4P94_09685) uvrA 2127752..2130586 (-) 2835 WP_026013597.1 excinuclease ABC subunit UvrA -
  AB4P94_RS09710 (AB4P94_09690) - 2130765..2132159 (+) 1395 WP_395610330.1 MFS transporter -
  AB4P94_RS09715 (AB4P94_09695) ssb 2132169..2132696 (+) 528 WP_016969466.1 single-stranded DNA-binding protein Machinery gene
  AB4P94_RS09720 (AB4P94_09700) - 2132766..2133671 (-) 906 WP_395610331.1 LysR family transcriptional regulator -
  AB4P94_RS09725 (AB4P94_09705) tam 2133773..2134534 (+) 762 WP_395610332.1 trans-aconitate 2-methyltransferase -
  AB4P94_RS09730 (AB4P94_09710) - 2134556..2135116 (-) 561 WP_395610333.1 cysteine hydrolase family protein -
  AB4P94_RS09735 (AB4P94_09715) - 2135343..2136452 (+) 1110 WP_395610334.1 DUF3182 family protein -
  AB4P94_RS09740 (AB4P94_09720) - 2136442..2137197 (+) 756 WP_395610335.1 alpha/beta hydrolase family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19370.52 Da        Isoelectric Point: 5.9314

>NTDB_id=1027317 AB4P94_RS09715 WP_016969466.1 2132169..2132696(+) (ssb) [Pseudomonas sp. B22129]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPAPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1027317 AB4P94_RS09715 WP_016969466.1 2132169..2132696(+) (ssb) [Pseudomonas sp. B22129]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCGAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAATGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCCGAAATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGCAGGGCGACCAACAAGGCGGGGGCAACAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCACGCCCGCAGCAGTCGGCACCGCAGCAGTCGCGTCAGGCGCCAGCGCCACAGCAGGCCGCTCCA
CAGCCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6H7U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.889

100

0.606
  ssb Glaesserella parasuis strain SC1401

48.634

100

0.509
  ssb Neisseria meningitidis MC58

47.222

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.486

Multiple sequence alignment