Detailed information NTG1027287

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AB4P91_RS09950
• Genome accession: NZ_CP162590
• Coordinates: 2236687..2238033 (-)
• Length: 448 a.a.
• NCBI ID: WP_395604719.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21128
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2231687..2243033

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P91_RS09935 (AB4P91_09925)	-	2231893..2234982 (+)	3090	WP_395604718.1	pilus assembly protein	-
AB4P91_RS09940 (AB4P91_09930)	-	2234998..2235399 (+)	402	WP_047303296.1	type IV pilin protein	-
AB4P91_RS09945 (AB4P91_09935)	thiO	2235457..2236557 (+)	1101	WP_150595319.1	glycine oxidase ThiO	-
AB4P91_RS09950 (AB4P91_09940)	pilR	2236687..2238033 (-)	1347	WP_395604719.1	sigma-54-dependent transcriptional regulator	Regulator
AB4P91_RS09955 (AB4P91_09945)	pilS	2238030..2239619 (-)	1590	WP_395604720.1	sensor histidine kinase	Regulator
AB4P91_RS09960 (AB4P91_09950)	-	2239609..2239842 (-)	234	WP_042561130.1	PP0621 family protein	-
AB4P91_RS09965 (AB4P91_09955)	-	2239969..2240985 (-)	1017	WP_150595323.1	outer membrane protein assembly factor BamD	-
AB4P91_RS09970 (AB4P91_09960)	rluD	2241137..2242099 (+)	963	WP_042561128.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
AB4P91_RS09975 (AB4P91_09965)	pgeF	2242096..2242818 (+)	723	WP_395604721.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50147.49 Da
• Isoelectric Point: 6.7020

>NTDB_id=1027287 AB4P91_RS09950 WP_395604719.1 2236687..2238033(-) (pilR) [Pseudomonas sp. B21128]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLNSYSARNLGEAQALLQRETFDLCLTDMRLPDGTGLELVQHIQRRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVATALRMPAAGDASTSIDRRLLGDSPPMRNLRKQVDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAGKPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAQGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEVLA
AHMLQRLAKDTGQPAARLHLHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGAIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=1027287 AB4P91_RS09950 WP_395604719.1 2236687..2238033(-) (pilR) [Pseudomonas sp. B21128]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCCGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCAACAGCTACAGCGCACGCAATCTGGGTGAGGCCCAGGCGCTGTTGCAGCGCGAGACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACGGGGCTGGAACTGGTGCAGCATATTCAGCGACGTTATCCACAACTGCCG
GTGGCGATGATCACCGCGTACGGCAGCCTGGAAACGGCAATCAATGCGTTGAAGGCGGGCGCTTTCGACTTTCTGACCAA
ACCGGTAGATCTCACCCGACTGCGGGAATTGGTCGCCACTGCACTGCGCATGCCCGCCGCTGGCGACGCAAGCACCTCAA
TTGATCGACGCTTGCTGGGTGATTCGCCGCCGATGCGCAACCTGCGCAAACAAGTCGACAAACTCGCACGCAGCCAGGCA
CCGGTGTACATCAGCGGTGAATCCGGCAGCGGCAAAGAGCTGGTCGCACGACTGATCCACGAACAAGGGCCTCGCGCCGG
CAAACCGTTCGTGCCGGTGAACTGCGGGGCAATCCCCTCGGAACTGATGGAAAGCGAGTTTTTCGGTCATCGCAAAGGCA
GTTTTACCGGCGCGGTCGAGGACAAACCGGGCCTGTTCCAGGCTGCACAGGGCGGGACATTGTTTCTCGATGAAGTGGCG
GACTTGCCACTGTCGATGCAGGTAAAGCTGCTGCGGGCGATTCAGGAAAAAGCCGTACGCAGCGTCGGCGGTCAGCAGGA
AACCGTGGTCGATGTGCGCATTCTCTGCGCGACGCACAAGGACCTCGACGCAGAAGTCGCCGCCGAACGCTTTCGTCAGG
ATCTTTATTACCGGCTAAACGTGATCGAATTGCGTGTGCCGCCCTTGCGCGAGCGACGGGATGACATTGAGGTGTTGGCG
GCGCACATGCTTCAGCGTCTGGCCAAAGACACCGGCCAACCCGCGGCACGCCTGCATCTGCACGCTTTGGAGGCTCTGAA
AAACTATCGGTTTCCGGGGAATGTGCGGGAACTGGAGAACGTGCTCGAACGGGCGCATACCTTGTGTGAGAACCGTACGA
TCGAGGCTGAAGATTTGCGCTTGAGCGAGGGCAACTGTGCGGCGGATGGCGCGATTGCCGATCTGACGCAGATCGACAAT
CTGGAGGATTATCTGGAGAACGTCGAACGTAAACTGATTTTGCAGGCGCTGGAGGAGACCCGCTGGAATCGGACGGCGGC
GGCGCAGCGGTTGAGTCTTTCATTCCGGTCGATGCGTTACCGACTGAAAAAGCTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.233	98.884	0.783
pilR	Acinetobacter baumannii strain A118	48.802	100	0.5
luxO	Vibrio cholerae strain A1552	40.199	89.955	0.362