Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AB4P91_RS09955 Genome accession   NZ_CP162590
Coordinates   2238030..2239619 (-) Length   529 a.a.
NCBI ID   WP_395604720.1    Uniprot ID   -
Organism   Pseudomonas sp. B21128     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2233030..2244619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P91_RS09940 (AB4P91_09930) - 2234998..2235399 (+) 402 WP_047303296.1 type IV pilin protein -
  AB4P91_RS09945 (AB4P91_09935) thiO 2235457..2236557 (+) 1101 WP_150595319.1 glycine oxidase ThiO -
  AB4P91_RS09950 (AB4P91_09940) pilR 2236687..2238033 (-) 1347 WP_395604719.1 sigma-54-dependent transcriptional regulator Regulator
  AB4P91_RS09955 (AB4P91_09945) pilS 2238030..2239619 (-) 1590 WP_395604720.1 sensor histidine kinase Regulator
  AB4P91_RS09960 (AB4P91_09950) - 2239609..2239842 (-) 234 WP_042561130.1 PP0621 family protein -
  AB4P91_RS09965 (AB4P91_09955) - 2239969..2240985 (-) 1017 WP_150595323.1 outer membrane protein assembly factor BamD -
  AB4P91_RS09970 (AB4P91_09960) rluD 2241137..2242099 (+) 963 WP_042561128.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB4P91_RS09975 (AB4P91_09965) pgeF 2242096..2242818 (+) 723 WP_395604721.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58649.48 Da        Isoelectric Point: 7.0065

>NTDB_id=1027288 AB4P91_RS09955 WP_395604720.1 2238030..2239619(-) (pilS) [Pseudomonas sp. B21128]
MIAEASHADSKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLTSANDDLLRNGSWLYLVLNILLVVFLENTRRPAQLF
SLALVDVLMLCGLFYAAGGVASALGNLLIVSVAISNTLLRRRIGLLIAAIGAIGIVGLSFLLSFSHPLSANEYLQAGTLG
ALCFAASLLVQGLVRRLEVSETLAEQTASKVVGLEALNALILQRMRTGILVLDEQRRIQLANHSAQTLLAQSHLQGHLID
DYSTALVERLQLWLNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQIAQQAQQLKLASLGRLTAGISHE
IRNPLGAISHAAQLLGESEELDSADRRLTQIIQDHSQRMNRIIENVLQLSRRQQSAPQRLDLKPWLENFVTESRMQATER
QKIHLRINSGDFATLMDPNQLTQILDNLLRNGWRHSAMLHDQAEVWLALFIDPESQLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFNPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1027288 AB4P91_RS09955 WP_395604720.1 2238030..2239619(-) (pilS) [Pseudomonas sp. B21128]
GTGATCGCTGAGGCCTCCCACGCCGACAGCAAACAGGCTCAGCGTCTGCTGCGCCTTTATCATCTTTACCGTTTAAGTAT
CGGCATCACCTTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCA
ACGGCAGCTGGCTGTACCTGGTGCTGAACATTTTGCTGGTGGTGTTCCTGGAGAACACCCGACGCCCCGCGCAATTGTTC
AGCCTGGCGCTGGTCGACGTTCTGATGCTGTGCGGGTTGTTCTACGCGGCTGGCGGCGTGGCCAGTGCGCTCGGCAACTT
GCTGATCGTTTCTGTGGCGATCAGCAATACCTTGCTGCGCCGCCGCATCGGTCTGCTGATCGCCGCCATCGGCGCCATCG
GCATTGTCGGATTAAGCTTTCTGCTGAGTTTCAGCCACCCCCTGAGCGCCAACGAATACCTGCAGGCCGGCACCCTTGGC
GCGTTGTGTTTTGCCGCTTCATTGCTGGTGCAGGGGCTGGTCCGGCGGCTGGAGGTCAGCGAAACCCTGGCCGAGCAAAC
CGCCAGCAAAGTGGTCGGCCTGGAGGCTCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGGATCCTGGTGCTCGACG
AACAACGCCGGATACAACTGGCCAATCACAGCGCGCAGACCCTGCTCGCGCAATCGCACCTTCAGGGCCATTTGATCGAC
GATTATTCGACCGCGCTGGTCGAACGCCTGCAATTGTGGCTGAACAACCCGACACTGCGCCCACAAAGTCTGAAAATCCC
CGGCAACGGTCTGGAACTGCAGCCTAGCTTCATCGCCCTCGAACAAAGCCCCAATCAACAAACCCTGGTGTTTCTCGAAG
ACCTCGCGCAGATCGCTCAACAAGCCCAGCAACTGAAACTTGCCTCGCTCGGACGTTTGACGGCCGGCATTTCCCACGAG
ATTCGCAATCCGCTGGGCGCCATCAGTCATGCCGCGCAGTTGTTGGGGGAATCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAATTATCGAAAACGTCCTGCAACTGTCCCGCCGTCAAC
AGAGCGCTCCACAACGGCTGGACCTCAAGCCGTGGCTGGAAAACTTCGTCACTGAGAGCCGCATGCAAGCTACCGAGCGG
CAGAAGATTCATCTGCGGATCAACTCGGGCGACTTCGCCACCCTGATGGATCCCAACCAGCTCACACAAATTCTCGACAA
TCTTTTACGCAACGGCTGGCGTCACAGCGCCATGCTGCATGATCAGGCCGAGGTCTGGCTGGCCCTGTTCATCGACCCCG
AAAGCCAGCTGGCGGTGCTCGAGGTTCAAGACAATGGCCCCGGCGTACCGCTTGATCAGCAAGCGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAAGGCACCGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTCAATCCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.377

100

0.605

Multiple sequence alignment