Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4P96_RS05180 Genome accession   NZ_CP162589
Coordinates   1137906..1138433 (+) Length   175 a.a.
NCBI ID   WP_017135971.1    Uniprot ID   A0A5R8R654
Organism   Pseudomonas sp. B19125     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1132906..1143433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P96_RS05165 (AB4P96_05165) bfr 1132959..1133423 (+) 465 WP_015886133.1 bacterioferritin -
  AB4P96_RS05170 (AB4P96_05170) uvrA 1133489..1136323 (-) 2835 WP_026013597.1 excinuclease ABC subunit UvrA -
  AB4P96_RS05175 (AB4P96_05175) - 1136502..1137896 (+) 1395 WP_395600556.1 MFS transporter -
  AB4P96_RS05180 (AB4P96_05180) ssb 1137906..1138433 (+) 528 WP_017135971.1 single-stranded DNA-binding protein Machinery gene
  AB4P96_RS05185 (AB4P96_05185) - 1138501..1139409 (-) 909 WP_395600557.1 LysR family transcriptional regulator -
  AB4P96_RS05190 (AB4P96_05190) tam 1139512..1140273 (+) 762 WP_186617128.1 trans-aconitate 2-methyltransferase -
  AB4P96_RS05195 (AB4P96_05195) - 1140294..1140857 (-) 564 WP_395600558.1 cysteine hydrolase family protein -
  AB4P96_RS05200 (AB4P96_05200) - 1141107..1142216 (+) 1110 WP_395600559.1 DUF3182 family protein -
  AB4P96_RS05205 (AB4P96_05205) - 1142206..1142961 (+) 756 WP_017135976.1 S9 family peptidase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19426.58 Da        Isoelectric Point: 5.9314

>NTDB_id=1027258 AB4P96_RS05180 WP_017135971.1 1137906..1138433(+) (ssb) [Pseudomonas sp. B19125]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPTPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1027258 AB4P96_RS05180 WP_017135971.1 1137906..1138433(+) (ssb) [Pseudomonas sp. B19125]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACTTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACTGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTGGCAGAAATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTGGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGACCAACAGGGCGGGGGCAATAACTACCAGCAGTCCGCTCCGACCC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCGGCTCCGCAACAGTCGCGCCAGGCACCGCCTCCACAGCAGGCCGCGCCA
CAGCCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5R8R654

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.989

100

0.606
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.491

Multiple sequence alignment