Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4P90_RS26365 Genome accession   NZ_CP162588
Coordinates   5640663..5641178 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas sp. B16120     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5635663..5646178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P90_RS26340 (AB4P90_26275) - 5636037..5636792 (-) 756 WP_019818878.1 S9 family peptidase -
  AB4P90_RS26345 (AB4P90_26280) - 5636782..5637891 (-) 1110 WP_395605487.1 DUF3182 family protein -
  AB4P90_RS26350 (AB4P90_26285) - 5638061..5639032 (-) 972 WP_395605488.1 GlxA family transcriptional regulator -
  AB4P90_RS26355 (AB4P90_26290) - 5639129..5639692 (+) 564 WP_019818884.1 cysteine hydrolase family protein -
  AB4P90_RS26360 (AB4P90_26295) tam 5639715..5640476 (-) 762 WP_038451699.1 trans-aconitate 2-methyltransferase -
  AB4P90_RS26365 (AB4P90_26300) ssb 5640663..5641178 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  AB4P90_RS26370 (AB4P90_26305) - 5641188..5642582 (-) 1395 WP_014720149.1 MFS transporter -
  AB4P90_RS26375 (AB4P90_26310) uvrA 5642761..5645595 (+) 2835 WP_014720150.1 excinuclease ABC subunit UvrA -
  AB4P90_RS26380 (AB4P90_26315) bfr 5645664..5646128 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=1027241 AB4P90_RS26365 WP_003232445.1 5640663..5641178(-) (ssb) [Pseudomonas sp. B16120]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1027241 AB4P90_RS26365 WP_003232445.1 5640663..5641178(-) (ssb) [Pseudomonas sp. B16120]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGTGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGCCCACAGC
AGTCGCGTCCGCAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGCCCAGCACCACAGCAGGCTGCTCCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment