Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4P97_RS20380 Genome accession   NZ_CP162582
Coordinates   4348879..4349403 (-) Length   174 a.a.
NCBI ID   WP_042561333.1    Uniprot ID   -
Organism   Pseudomonas sp. A1230     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4343879..4354403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P97_RS20355 (AB4P97_20300) - 4344371..4345021 (+) 651 WP_395601545.1 DUF2491 family protein -
  AB4P97_RS20360 (AB4P97_20305) - 4345037..4345462 (+) 426 WP_042561324.1 DUF350 domain-containing protein -
  AB4P97_RS20365 (AB4P97_20310) - 4345480..4346175 (+) 696 WP_042561325.1 DUF1190 domain-containing protein -
  AB4P97_RS20370 (AB4P97_20315) - 4346178..4347335 (+) 1158 WP_395601546.1 glutathionylspermidine synthase family protein -
  AB4P97_RS20375 (AB4P97_20320) - 4347411..4348616 (-) 1206 WP_395601547.1 acyltransferase family protein -
  AB4P97_RS20380 (AB4P97_20325) ssb 4348879..4349403 (-) 525 WP_042561333.1 single-stranded DNA-binding protein Machinery gene
  AB4P97_RS20385 (AB4P97_20330) - 4349413..4350810 (-) 1398 WP_042561334.1 MFS transporter -
  AB4P97_RS20390 (AB4P97_20335) uvrA 4351002..4353836 (+) 2835 WP_042561335.1 excinuclease ABC subunit UvrA -
  AB4P97_RS20395 (AB4P97_20340) bfr 4353901..4354368 (-) 468 WP_047303712.1 bacterioferritin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19256.42 Da        Isoelectric Point: 5.9366

>NTDB_id=1027189 AB4P97_RS20380 WP_042561333.1 4348879..4349403(-) (ssb) [Pseudomonas sp. A1230]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGEQQGGGNNYQQSAPAPRQQAPRPQQSAPQQRSAPAPQQAAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1027189 AB4P97_RS20380 WP_042561333.1 4348879..4349403(-) (ssb) [Pseudomonas sp. A1230]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTTGGCAAGGTTGCAGAAATCGCTGGCGAATACCTGCGTAAAGGCTCGCAGGTTTACATCGAA
GGCAAGCTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTTGGCGGCCGTCCACAACAGGGCGAGCAACAAGGCGGCGGCAACAACTATCAGCAGTCCGCTCCAGCGC
CACGTCAGCAGGCTCCACGCCCGCAGCAGTCGGCTCCGCAACAGCGTTCGGCCCCGGCTCCACAGCAAGCCGCGCCGCAA
CCGGCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.011

100

0.603
  ssb Neisseria meningitidis MC58

49.162

100

0.506
  ssb Neisseria gonorrhoeae MS11

49.162

100

0.506
  ssb Glaesserella parasuis strain SC1401

47.802

100

0.5

Multiple sequence alignment