Detailed information NTG1026900

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: AB3467_RS01885
• Genome accession: NZ_CP162521
• Coordinates: 397086..398150 (+)
• Length: 354 a.a.
• NCBI ID: WP_025258132.1
• Uniprot ID: -
• Organism: Pseudomonas cichorii strain UPB 461
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 392086..403150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3467_RS01870 (AB3467_01855)	-	392367..393221 (+)	855	WP_025258129.1	sulfurtransferase	-
AB3467_RS01875 (AB3467_01860)	-	393273..394319 (-)	1047	WP_025258130.1	hydrolase	-
AB3467_RS01880 (AB3467_01865)	-	394436..396874 (-)	2439	WP_371874242.1	penicillin-binding protein 1A	-
AB3467_RS01885 (AB3467_01870)	pilM	397086..398150 (+)	1065	WP_025258132.1	pilus assembly protein PilM	Machinery gene
AB3467_RS01890 (AB3467_01875)	-	398150..398722 (+)	573	WP_025258133.1	PilN domain-containing protein	-
AB3467_RS01895 (AB3467_01880)	pilO	398719..399342 (+)	624	WP_025258134.1	type 4a pilus biogenesis protein PilO	-
AB3467_RS01900 (AB3467_01885)	-	399339..399866 (+)	528	WP_025258135.1	pilus assembly protein PilP	-
AB3467_RS01905 (AB3467_01890)	pilQ	399914..402013 (+)	2100	WP_025258136.1	type IV pilus secretin PilQ	Machinery gene
AB3467_RS01910 (AB3467_01895)	aroK	402018..402536 (+)	519	WP_025258137.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 38127.62 Da
• Isoelectric Point: 4.6928

>NTDB_id=1026900 AB3467_RS01885 WP_025258132.1 397086..398150(+) (pilM) [Pseudomonas cichorii strain UPB 461]
MFELFGKKANTLLGIDISSTSVKLLELSRSGTRYKVESYAVEPLPANAVVEKNIAELEGVGQALSRVLVKAKTNAKIVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKLEADQYIPYPLEEVAIDFEVQGYSARNPERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLSAQLGNDHDQLTVAVVDIGATMTTLSVLHHGRIIYTREQLFGGRQLTEEIQRRYGLSM
EEAGLAKKQGGLSDDYVSEVLNPFKDALVQQVSRSLQFFFAAGQYNTVDYIMLAGGTASIPGLEHLIQKRLGTPTLVANP
FADMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=1026900 AB3467_RS01885 WP_025258132.1 397086..398150(+) (pilM) [Pseudomonas cichorii strain UPB 461]
GTGTTCGAACTCTTCGGTAAGAAGGCCAACACCCTTCTAGGGATCGATATTAGCTCTACCTCGGTAAAACTCCTTGAGTT
GAGTCGTTCCGGCACTCGTTACAAGGTCGAGTCTTATGCGGTCGAACCGCTGCCGGCCAATGCCGTCGTCGAAAAGAATA
TTGCCGAACTCGAAGGGGTTGGACAGGCGTTGTCGCGCGTGCTGGTCAAGGCCAAGACGAACGCCAAAATAGTGGCGGTT
GCTGTGGCGGGCTCGGCGGTCATCACCAAGACCATCGAGATGGACGCCGGTCTGTCCGACGACGACATGGAAAACCAGCT
CAAGCTTGAAGCTGACCAGTACATTCCCTATCCCCTCGAAGAAGTCGCCATCGATTTTGAAGTCCAGGGCTATTCGGCTC
GCAATCCCGAGCGCGTCGAAGTGCTGCTGGCCGCCTGCCGCAAGGAAAACGTGGAAGTACGTGAGGCCGCTTTGGCGCTG
GCCGGGCTGACGGCCCGTGTCGTCGACGTGGAGGCCTATGCACTGGAGCGTTCTTTCGGTCTGCTGTCTGCCCAACTGGG
CAATGACCACGATCAACTGACCGTTGCCGTGGTGGACATCGGCGCAACCATGACCACCCTGAGCGTGCTGCATCACGGGC
GCATCATCTATACCCGCGAGCAATTGTTCGGTGGGCGCCAGCTGACCGAGGAAATTCAGCGTCGCTATGGCCTGTCCATG
GAAGAAGCGGGGCTTGCGAAGAAGCAGGGCGGGCTGTCCGACGATTACGTCAGTGAAGTGTTGAACCCCTTCAAGGATGC
TCTGGTGCAGCAAGTGTCTCGCTCGCTGCAGTTTTTCTTTGCTGCCGGGCAGTACAACACCGTCGACTACATCATGCTGG
CGGGCGGTACGGCTTCCATTCCGGGACTTGAGCACTTGATCCAGAAACGTCTTGGCACGCCAACCCTGGTCGCGAACCCT
TTTGCCGACATGGCCCTGAGCTCCAAGGTCAACGCCGGTGCATTGGCCAGTGATGCTCCCGCGTTGATGATCGCCTGCGG
TCTTGCCCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Acinetobacter baumannii D1279779	55.367	100	0.554
comM	Acinetobacter nosocomialis M2	55.367	100	0.554
comM	Acinetobacter baylyi ADP1	53.107	100	0.531
pilM	Legionella pneumophila strain ERS1305867	46.61	100	0.466